RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 CCDC125Q86Z20 511 aa21.87■■□□□ 1.09
HDAC6-218ENST00000470942 TCP11L2Q8N4U5 519 aa21.87■■□□□ 1.09
HDAC6-218ENST00000470942 AXIN2Q9Y2T1 843 aa21.87■■□□□ 1.09
HDAC6-218ENST00000470942 LTN1O94822 1766 aa21.85■■□□□ 1.09
HDAC6-218ENST00000470942 BARGINQ6ZT62 677 aa21.85■■□□□ 1.09
HDAC6-218ENST00000470942 TOM1L2Q6ZVM7 507 aa21.85■■□□□ 1.09
HDAC6-218ENST00000470942 POLR3GLQ9BT43 218 aa21.85■■□□□ 1.09
HDAC6-218ENST00000470942 CRB1P82279 1406 aa21.85■■□□□ 1.09
HDAC6-218ENST00000470942 HSPA5P11021 654 aaKnown RBP21.84■■□□□ 1.09
HDAC6-218ENST00000470942 THRAP3Q9Y2W1 955 aaKnown RBP21.84■■□□□ 1.09
HDAC6-218ENST00000470942 CSB-PGBD3P0DP91 1061 aa21.83■■□□□ 1.09
HDAC6-218ENST00000470942 FAM182BQ5T319 152 aa21.83■■□□□ 1.09
HDAC6-218ENST00000470942 COG3Q96JB2 828 aa21.83■■□□□ 1.09
HDAC6-218ENST00000470942 OVOS2A0A0J9YW53 1432 aa21.82■■□□□ 1.08
HDAC6-218ENST00000470942 OVOS2Q6IE36 1432 aa21.82■■□□□ 1.08
HDAC6-218ENST00000470942 SF3B2Q13435 895 aaKnown RBP21.82■■□□□ 1.08
HDAC6-218ENST00000470942 WDR17Q8IZU2 1322 aa21.81■■□□□ 1.08
HDAC6-218ENST00000470942 BLMP54132 1417 aaPredicted RBP21.81■■□□□ 1.08
HDAC6-218ENST00000470942 MYOM1P52179 1685 aa21.81■■□□□ 1.08
HDAC6-218ENST00000470942 PDE3BQ13370 1112 aa21.8■■□□□ 1.08
HDAC6-218ENST00000470942 ABCC6O95255 1503 aa21.79■■□□□ 1.08
HDAC6-218ENST00000470942 GGNBP2Q9H3C7 697 aa21.78■■□□□ 1.08
HDAC6-218ENST00000470942 KIF20BQ96Q89 1820 aa21.78■■□□□ 1.08
HDAC6-218ENST00000470942 FYB1O15117 783 aa21.77■■□□□ 1.08
HDAC6-218ENST00000470942 PARP4Q9UKK3 1724 aaKnown RBP21.76■■□□□ 1.07
HDAC6-218ENST00000470942 CARD10Q9BWT7 1032 aa21.75■■□□□ 1.07
HDAC6-218ENST00000470942 WNK3Q9BYP7 1800 aa21.74■■□□□ 1.07
HDAC6-218ENST00000470942 FBLN1P23142 703 aa21.74■■□□□ 1.07
HDAC6-218ENST00000470942 FAM196AQ6ZSG2 479 aa21.74■■□□□ 1.07
HDAC6-218ENST00000470942 DEFB132Q7Z7B7 95 aa21.74■■□□□ 1.07
HDAC6-218ENST00000470942 CARD14Q9BXL6 1004 aa21.74■■□□□ 1.07
HDAC6-218ENST00000470942 NSD3Q9BZ95 1437 aa21.73■■□□□ 1.07
HDAC6-218ENST00000470942 RGPD1P0DJD0 1748 aa21.73■■□□□ 1.07
HDAC6-218ENST00000470942 ANKRD24Q8TF21 1146 aa21.73■■□□□ 1.07
HDAC6-218ENST00000470942 NLRP2Q9NX02 1062 aa21.73■■□□□ 1.07
HDAC6-218ENST00000470942 DDB1Q16531 1140 aa21.72■■□□□ 1.07
HDAC6-218ENST00000470942 IP6K1Q92551 441 aa21.72■■□□□ 1.07
HDAC6-218ENST00000470942 ERBB3P21860 1342 aa21.72■■□□□ 1.07
HDAC6-218ENST00000470942 BAG6P46379 1132 aa21.71■■□□□ 1.07
HDAC6-218ENST00000470942 AMPHP49418 695 aa21.71■■□□□ 1.07
HDAC6-218ENST00000470942 CDCA7Q9BWT1 371 aaPredicted RBP21.71■■□□□ 1.07
HDAC6-218ENST00000470942 MAP3K19Q56UN5 1328 aa21.71■■□□□ 1.07
HDAC6-218ENST00000470942 CCDC7Q96M83 1385 aa21.71■■□□□ 1.07
HDAC6-218ENST00000470942 LTV1Q96GA3 475 aaPredicted RBP21.7■■□□□ 1.06
HDAC6-218ENST00000470942 LRRC37A3O60309 1634 aa21.69■■□□□ 1.06
HDAC6-218ENST00000470942 TRIM37O94972 964 aa21.69■■□□□ 1.06
HDAC6-218ENST00000470942 HOXC9P31274 260 aa21.68■■□□□ 1.06
HDAC6-218ENST00000470942 RRS1Q15050 365 aaKnown RBP21.68■■□□□ 1.06
HDAC6-218ENST00000470942 TNS1Q9HBL0 1735 aaKnown RBP21.66■■□□□ 1.06
HDAC6-218ENST00000470942 C11orf95C9JLR9 678 aaPredicted RBP21.66■■□□□ 1.06
HDAC6-218ENST00000470942 CGNL1Q0VF96 1302 aa21.65■■□□□ 1.06
HDAC6-218ENST00000470942 EXOC5O00471 708 aa21.65■■□□□ 1.06
HDAC6-218ENST00000470942 EN1Q05925 392 aaPredicted RBP21.65■■□□□ 1.06
HDAC6-218ENST00000470942 DISP2A7MBM2 1401 aa21.64■■□□□ 1.06
HDAC6-218ENST00000470942 FAM208AQ9UK61 1670 aaKnown RBP21.64■■□□□ 1.05
HDAC6-218ENST00000470942 PANK3Q9H999 370 aa21.64■■□□□ 1.05
HDAC6-218ENST00000470942 OVOS2A0A0G2JMS6 1433 aa21.63■■□□□ 1.05
HDAC6-218ENST00000470942 RTL1A6NKG5 1358 aa21.62■■□□□ 1.05
HDAC6-218ENST00000470942 RGPD2P0DJD1 1756 aa21.62■■□□□ 1.05
HDAC6-218ENST00000470942 APBA3O96018 575 aa21.62■■□□□ 1.05
HDAC6-218ENST00000470942 IL2RBP14784 551 aa21.62■■□□□ 1.05
HDAC6-218ENST00000470942 MARCH10Q8NA82 808 aaPredicted RBP21.62■■□□□ 1.05
HDAC6-218ENST00000470942 PEAK1Q9H792 1746 aa21.61■■□□□ 1.05
HDAC6-218ENST00000470942 SBF2Q86WG5 1849 aa21.61■■□□□ 1.05
HDAC6-218ENST00000470942 MAP2P11137 1827 aaKnown RBP21.59■■□□□ 1.05
HDAC6-218ENST00000470942 ANKRD26Q9UPS8 1709 aa21.58■■□□□ 1.05
HDAC6-218ENST00000470942 EZH2Q15910 746 aaKnown RBP21.58■■□□□ 1.05
HDAC6-218ENST00000470942 KIF7Q2M1P5 1343 aa21.57■■□□□ 1.04
HDAC6-218ENST00000470942 TNS2Q63HR2 1409 aa21.57■■□□□ 1.04
HDAC6-218ENST00000470942 SMG6Q86US8 1419 aaKnown RBP21.57■■□□□ 1.04
HDAC6-218ENST00000470942 PPM1GO15355 546 aaPredicted RBP21.57■■□□□ 1.04
HDAC6-218ENST00000470942 HSP90AB2PQ58FF8 381 aa21.57■■□□□ 1.04
HDAC6-218ENST00000470942 EMILIN1Q9Y6C2 1016 aa21.57■■□□□ 1.04
HDAC6-218ENST00000470942 FLT4P35916 1363 aa21.57■■□□□ 1.04
HDAC6-218ENST00000470942 TNNT2P45379 298 aaPredicted RBP21.55■■□□□ 1.04
HDAC6-218ENST00000470942 CAMKK2Q96RR4 588 aa21.55■■□□□ 1.04
HDAC6-218ENST00000470942 INSRP06213 1382 aa21.55■■□□□ 1.04
HDAC6-218ENST00000470942 KIF24Q5T7B8 1368 aa21.55■■□□□ 1.04
HDAC6-218ENST00000470942 KAT6BQ8WYB5 2073 aa21.55■■□□□ 1.04
HDAC6-218ENST00000470942 NBPF6Q5VWK0 638 aa21.54■■□□□ 1.04
HDAC6-218ENST00000470942 NBPF4Q96M43 638 aa21.54■■□□□ 1.04
HDAC6-218ENST00000470942 KNSTRNQ9Y448 316 aa21.54■■□□□ 1.04
HDAC6-218ENST00000470942 USHBP1Q8N6Y0 703 aa21.53■■□□□ 1.04
HDAC6-218ENST00000470942 BCL11BQ9C0K0 894 aaPredicted RBP21.52■■□□□ 1.04
HDAC6-218ENST00000470942 BCL9O00512 1426 aa21.52■■□□□ 1.04
HDAC6-218ENST00000470942 PTF1AQ7RTS3 328 aa21.51■■□□□ 1.03
HDAC6-218ENST00000470942 DDX54Q8TDD1 881 aaKnown RBP21.51■■□□□ 1.03
HDAC6-218ENST00000470942 NSD2O96028 1365 aa21.5■■□□□ 1.03
HDAC6-218ENST00000470942 PARD3Q8TEW0 1356 aa21.5■■□□□ 1.03
HDAC6-218ENST00000470942 POLKQ9UBT6 870 aa21.5■■□□□ 1.03
HDAC6-218ENST00000470942 PSDA5PKW4 1024 aaPredicted RBP21.49■■□□□ 1.03
HDAC6-218ENST00000470942 MORC1Q86VD1 984 aa21.49■■□□□ 1.03
HDAC6-218ENST00000470942 ACSBG1Q96GR2 724 aa21.49■■□□□ 1.03
HDAC6-218ENST00000470942 WASHC2AQ641Q2 1341 aa21.49■■□□□ 1.03
HDAC6-218ENST00000470942 RREB1Q92766 1687 aa21.48■■□□□ 1.03
HDAC6-218ENST00000470942 RAPGEF4Q8WZA2 1011 aa21.48■■□□□ 1.03
HDAC6-218ENST00000470942 MEGF6O75095 1541 aa21.47■■□□□ 1.03
HDAC6-218ENST00000470942 ZCRB1Q8TBF4 217 aaKnown RBP21.47■■□□□ 1.03
HDAC6-218ENST00000470942 PLSCR1O15162 318 aa21.46■■□□□ 1.03
HDAC6-218ENST00000470942 KCNQ2O43526 872 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms