RNA–Protein interactions for RNA: ENST00000468676.5

TMEM39A-205, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 935 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-205ENST00000468676 PANK3Q9H999 370 aa20.38■□□□□ 0.85
TMEM39A-205ENST00000468676 KIF20BQ96Q89 1820 aa20.38■□□□□ 0.85
TMEM39A-205ENST00000468676 GGNBP2Q9H3C7 697 aa20.37■□□□□ 0.85
TMEM39A-205ENST00000468676 COL5A2P05997 1499 aaPredicted RBP20.37■□□□□ 0.85
TMEM39A-205ENST00000468676 SPATA31A1Q5TZJ5 1347 aa20.36■□□□□ 0.85
TMEM39A-205ENST00000468676 ZEB1P37275 1124 aaPredicted RBP20.35■□□□□ 0.85
TMEM39A-205ENST00000468676 AXIN2Q9Y2T1 843 aa20.35■□□□□ 0.85
TMEM39A-205ENST00000468676 LTN1O94822 1766 aa20.34■□□□□ 0.85
TMEM39A-205ENST00000468676 LARP1Q6PKG0 1096 aaKnown RBP20.34■□□□□ 0.85
TMEM39A-205ENST00000468676 THRAP3Q9Y2W1 955 aaKnown RBP20.34■□□□□ 0.85
TMEM39A-205ENST00000468676 FAM98CQ17RN3 349 aaKnown RBP20.33■□□□□ 0.85
TMEM39A-205ENST00000468676 SEPT12Q8IYM1 358 aa20.33■□□□□ 0.85
TMEM39A-205ENST00000468676 CRB1P82279 1406 aa20.33■□□□□ 0.84
TMEM39A-205ENST00000468676 CCDC7Q96M83 1385 aa20.33■□□□□ 0.84
TMEM39A-205ENST00000468676 WDR17Q8IZU2 1322 aa20.32■□□□□ 0.84
TMEM39A-205ENST00000468676 RGPD5Q99666 1765 aa20.32■□□□□ 0.84
TMEM39A-205ENST00000468676 BARGINQ6ZT62 677 aa20.32■□□□□ 0.84
TMEM39A-205ENST00000468676 TCP11L2Q8N4U5 519 aa20.31■□□□□ 0.84
TMEM39A-205ENST00000468676 IP6K1Q92551 441 aa20.31■□□□□ 0.84
TMEM39A-205ENST00000468676 KNSTRNQ9Y448 316 aa20.31■□□□□ 0.84
TMEM39A-205ENST00000468676 NSD2O96028 1365 aa20.31■□□□□ 0.84
TMEM39A-205ENST00000468676 BLMP54132 1417 aaPredicted RBP20.3■□□□□ 0.84
TMEM39A-205ENST00000468676 A0A0G2JS52 829 aa20.3■□□□□ 0.84
TMEM39A-205ENST00000468676 CSB-PGBD3P0DP91 1061 aa20.3■□□□□ 0.84
TMEM39A-205ENST00000468676 MYT1Q01538 1121 aa20.3■□□□□ 0.84
TMEM39A-205ENST00000468676 TOM1L2Q6ZVM7 507 aa20.3■□□□□ 0.84
TMEM39A-205ENST00000468676 MAP3K19Q56UN5 1328 aa20.29■□□□□ 0.84
TMEM39A-205ENST00000468676 WASHC2AQ641Q2 1341 aa20.29■□□□□ 0.84
TMEM39A-205ENST00000468676 AMPHP49418 695 aa20.29■□□□□ 0.84
TMEM39A-205ENST00000468676 USP35Q9P2H5 1018 aa20.29■□□□□ 0.84
TMEM39A-205ENST00000468676 CARD10Q9BWT7 1032 aa20.28■□□□□ 0.84
TMEM39A-205ENST00000468676 RTL1A6NKG5 1358 aa20.28■□□□□ 0.84
TMEM39A-205ENST00000468676 KIF24Q5T7B8 1368 aa20.27■□□□□ 0.84
TMEM39A-205ENST00000468676 BRWD3Q6RI45 1802 aa20.27■□□□□ 0.84
TMEM39A-205ENST00000468676 ERBB3P21860 1342 aa20.27■□□□□ 0.83
TMEM39A-205ENST00000468676 HOXC9P31274 260 aa20.26■□□□□ 0.83
TMEM39A-205ENST00000468676 KRT27Q7Z3Y8 459 aa20.26■□□□□ 0.83
TMEM39A-205ENST00000468676 ANKRD26Q9UPS8 1709 aa20.26■□□□□ 0.83
TMEM39A-205ENST00000468676 THSD7AQ9UPZ6 1657 aa20.26■□□□□ 0.83
TMEM39A-205ENST00000468676 FBLN1P23142 703 aa20.25■□□□□ 0.83
TMEM39A-205ENST00000468676 ANKRD24Q8TF21 1146 aa20.25■□□□□ 0.83
TMEM39A-205ENST00000468676 CDCA7Q9BWT1 371 aaPredicted RBP20.25■□□□□ 0.83
TMEM39A-205ENST00000468676 RRS1Q15050 365 aaKnown RBP20.24■□□□□ 0.83
TMEM39A-205ENST00000468676 UPF1Q92900 1129 aaKnown RBP eCLIP20.23■□□□□ 0.83
TMEM39A-205ENST00000468676 NLRP2Q9NX02 1062 aa20.22■□□□□ 0.83
TMEM39A-205ENST00000468676 FLT4P35916 1363 aa20.21■□□□□ 0.83
TMEM39A-205ENST00000468676 MAP2P11137 1827 aaKnown RBP20.21■□□□□ 0.83
TMEM39A-205ENST00000468676 EP400Q96L91 3159 aa20.21■□□□□ 0.83
TMEM39A-205ENST00000468676 PER1O15534 1290 aaPredicted RBP20.21■□□□□ 0.83
TMEM39A-205ENST00000468676 AMER1Q5JTC6 1135 aaPredicted RBP20.21■□□□□ 0.83
TMEM39A-205ENST00000468676 MORC1Q86VD1 984 aa20.21■□□□□ 0.83
TMEM39A-205ENST00000468676 FAM208AQ9UK61 1670 aaKnown RBP20.21■□□□□ 0.83
TMEM39A-205ENST00000468676 CCDC125Q86Z20 511 aa20.2■□□□□ 0.82
TMEM39A-205ENST00000468676 INSRP06213 1382 aa20.2■□□□□ 0.82
TMEM39A-205ENST00000468676 SMG6Q86US8 1419 aaKnown RBP20.19■□□□□ 0.82
TMEM39A-205ENST00000468676 PDE3BQ13370 1112 aa20.19■□□□□ 0.82
TMEM39A-205ENST00000468676 LTV1Q96GA3 475 aaPredicted RBP20.19■□□□□ 0.82
TMEM39A-205ENST00000468676 PARP4Q9UKK3 1724 aaKnown RBP20.19■□□□□ 0.82
TMEM39A-205ENST00000468676 EMILIN1Q9Y6C2 1016 aa20.18■□□□□ 0.82
TMEM39A-205ENST00000468676 NPC1L1Q9UHC9 1359 aa20.18■□□□□ 0.82
TMEM39A-205ENST00000468676 TNNT2P45379 298 aaPredicted RBP20.17■□□□□ 0.82
TMEM39A-205ENST00000468676 POLKQ9UBT6 870 aa20.17■□□□□ 0.82
TMEM39A-205ENST00000468676 WNK3Q9BYP7 1800 aa20.16■□□□□ 0.82
TMEM39A-205ENST00000468676 PPM1GO15355 546 aaPredicted RBP20.16■□□□□ 0.82
TMEM39A-205ENST00000468676 DDB1Q16531 1140 aa20.16■□□□□ 0.82
TMEM39A-205ENST00000468676 HSP90AB2PQ58FF8 381 aa20.16■□□□□ 0.82
TMEM39A-205ENST00000468676 PEAK1Q9H792 1746 aa20.16■□□□□ 0.82
TMEM39A-205ENST00000468676 DISP2A7MBM2 1401 aa20.15■□□□□ 0.82
TMEM39A-205ENST00000468676 IL2RBP14784 551 aa20.14■□□□□ 0.81
TMEM39A-205ENST00000468676 FAM196AQ6ZSG2 479 aa20.14■□□□□ 0.81
TMEM39A-205ENST00000468676 EXOC5O00471 708 aa20.13■□□□□ 0.81
TMEM39A-205ENST00000468676 SF3B2Q13435 895 aaKnown RBP20.11■□□□□ 0.81
TMEM39A-205ENST00000468676 LRRC37A3O60309 1634 aa20.1■□□□□ 0.81
TMEM39A-205ENST00000468676 CC2D1BQ5T0F9 858 aaKnown RBP20.1■□□□□ 0.81
TMEM39A-205ENST00000468676 NBPF6Q5VWK0 638 aa20.1■□□□□ 0.81
TMEM39A-205ENST00000468676 NBPF4Q96M43 638 aa20.1■□□□□ 0.81
TMEM39A-205ENST00000468676 RGPD2P0DJD1 1756 aa20.09■□□□□ 0.81
TMEM39A-205ENST00000468676 FAM182BQ5T319 152 aa20.09■□□□□ 0.81
TMEM39A-205ENST00000468676 OVOS2A0A0G2JMS6 1433 aa20.08■□□□□ 0.8
TMEM39A-205ENST00000468676 TNS2Q63HR2 1409 aa20.08■□□□□ 0.8
TMEM39A-205ENST00000468676 RAPGEF4Q8WZA2 1011 aa20.06■□□□□ 0.8
TMEM39A-205ENST00000468676 BCL9O00512 1426 aa20.05■□□□□ 0.8
TMEM39A-205ENST00000468676 MARCH10Q8NA82 808 aaPredicted RBP20.05■□□□□ 0.8
TMEM39A-205ENST00000468676 RGPD1P0DJD0 1748 aa20.05■□□□□ 0.8
TMEM39A-205ENST00000468676 EIF4A2Q14240 407 aaKnown RBP20.04■□□□□ 0.8
TMEM39A-205ENST00000468676 TATP17735 454 aaPredicted RBP20.03■□□□□ 0.8
TMEM39A-205ENST00000468676 MTHFSP49914 203 aa20.03■□□□□ 0.8
TMEM39A-205ENST00000468676 USHBP1Q8N6Y0 703 aa20.03■□□□□ 0.8
TMEM39A-205ENST00000468676 EYA1Q99502 592 aa20.03■□□□□ 0.8
TMEM39A-205ENST00000468676 NCAPD2Q15021 1401 aa20.02■□□□□ 0.8
TMEM39A-205ENST00000468676 TRIM37O94972 964 aa20.02■□□□□ 0.8
TMEM39A-205ENST00000468676 ZCRB1Q8TBF4 217 aaKnown RBP20.02■□□□□ 0.8
TMEM39A-205ENST00000468676 BAG6P46379 1132 aa20.01■□□□□ 0.79
TMEM39A-205ENST00000468676 CNGB1Q14028 1251 aaPredicted RBP20.01■□□□□ 0.79
TMEM39A-205ENST00000468676 MEGF6O75095 1541 aa20■□□□□ 0.79
TMEM39A-205ENST00000468676 SBF2Q86WG5 1849 aa19.99■□□□□ 0.79
TMEM39A-205ENST00000468676 IGSF1Q8N6C5 1336 aa19.99■□□□□ 0.79
TMEM39A-205ENST00000468676 PLEKHG2Q9H7P9 1386 aa19.98■□□□□ 0.79
TMEM39A-205ENST00000468676 DDX10Q13206 875 aaKnown RBP19.98■□□□□ 0.79
TMEM39A-205ENST00000468676 DDX54Q8TDD1 881 aaKnown RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms