RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 SPATA31A1Q5TZJ5 1347 aa24.47■■□□□ 1.51
VPS52-214ENST00000463486 LARP1Q6PKG0 1096 aaKnown RBP24.47■■□□□ 1.51
VPS52-214ENST00000463486 CCDC7Q96M83 1385 aa24.46■■□□□ 1.51
VPS52-214ENST00000463486 ZBTB7CA1YPR0 619 aa24.46■■□□□ 1.51
VPS52-214ENST00000463486 CCDC9Q9Y3X0 531 aaKnown RBP24.45■■□□□ 1.5
VPS52-214ENST00000463486 ABCC6O95255 1503 aa24.45■■□□□ 1.5
VPS52-214ENST00000463486 EVA1CP58658 441 aa24.44■■□□□ 1.5
VPS52-214ENST00000463486 KIF20BQ96Q89 1820 aa24.44■■□□□ 1.5
VPS52-214ENST00000463486 RGPD5Q99666 1765 aa24.42■■□□□ 1.5
VPS52-214ENST00000463486 SEPT12Q8IYM1 358 aa24.42■■□□□ 1.5
VPS52-214ENST00000463486 LTN1O94822 1766 aa24.42■■□□□ 1.5
VPS52-214ENST00000463486 CGNL1Q0VF96 1302 aa24.41■■□□□ 1.5
VPS52-214ENST00000463486 MAP3K19Q56UN5 1328 aa24.41■■□□□ 1.5
VPS52-214ENST00000463486 FAM98CQ17RN3 349 aaKnown RBP24.41■■□□□ 1.5
VPS52-214ENST00000463486 PER1O15534 1290 aaPredicted RBP24.4■■□□□ 1.5
VPS52-214ENST00000463486 EP400Q96L91 3159 aa24.4■■□□□ 1.5
VPS52-214ENST00000463486 WDR17Q8IZU2 1322 aa24.39■■□□□ 1.5
VPS52-214ENST00000463486 CRB1P82279 1406 aa24.39■■□□□ 1.5
VPS52-214ENST00000463486 IP6K1Q92551 441 aa24.39■■□□□ 1.49
VPS52-214ENST00000463486 THSD7AQ9UPZ6 1657 aa24.38■■□□□ 1.49
VPS52-214ENST00000463486 BARGINQ6ZT62 677 aa24.38■■□□□ 1.49
VPS52-214ENST00000463486 RRS1Q15050 365 aaKnown RBP24.37■■□□□ 1.49
VPS52-214ENST00000463486 BRWD3Q6RI45 1802 aa24.37■■□□□ 1.49
VPS52-214ENST00000463486 ERBB3P21860 1342 aa24.36■■□□□ 1.49
VPS52-214ENST00000463486 TCP11L2Q8N4U5 519 aa24.36■■□□□ 1.49
VPS52-214ENST00000463486 USP35Q9P2H5 1018 aa24.36■■□□□ 1.49
VPS52-214ENST00000463486 HOXC9P31274 260 aa24.35■■□□□ 1.49
VPS52-214ENST00000463486 AMER1Q5JTC6 1135 aaPredicted RBP24.35■■□□□ 1.49
VPS52-214ENST00000463486 BLMP54132 1417 aaPredicted RBP24.35■■□□□ 1.49
VPS52-214ENST00000463486 THRAP3Q9Y2W1 955 aaKnown RBP24.34■■□□□ 1.49
VPS52-214ENST00000463486 TOM1L2Q6ZVM7 507 aa24.33■■□□□ 1.49
VPS52-214ENST00000463486 UPF1Q92900 1129 aaKnown RBP eCLIP24.33■■□□□ 1.49
VPS52-214ENST00000463486 CARD10Q9BWT7 1032 aa24.33■■□□□ 1.49
VPS52-214ENST00000463486 ANKRD24Q8TF21 1146 aa24.32■■□□□ 1.48
VPS52-214ENST00000463486 PEAK1Q9H792 1746 aa24.32■■□□□ 1.48
VPS52-214ENST00000463486 RTL1A6NKG5 1358 aa24.31■■□□□ 1.48
VPS52-214ENST00000463486 NSD2O96028 1365 aa24.31■■□□□ 1.48
VPS52-214ENST00000463486 ANKRD26Q9UPS8 1709 aa24.31■■□□□ 1.48
VPS52-214ENST00000463486 KNSTRNQ9Y448 316 aa24.31■■□□□ 1.48
VPS52-214ENST00000463486 AMPHP49418 695 aa24.3■■□□□ 1.48
VPS52-214ENST00000463486 EMILIN1Q9Y6C2 1016 aa24.3■■□□□ 1.48
VPS52-214ENST00000463486 KRT27Q7Z3Y8 459 aa24.29■■□□□ 1.48
VPS52-214ENST00000463486 KIF24Q5T7B8 1368 aa24.29■■□□□ 1.48
VPS52-214ENST00000463486 CSB-PGBD3P0DP91 1061 aa24.28■■□□□ 1.48
VPS52-214ENST00000463486 ZEB1P37275 1124 aaPredicted RBP24.28■■□□□ 1.48
VPS52-214ENST00000463486 POLKQ9UBT6 870 aa24.28■■□□□ 1.48
VPS52-214ENST00000463486 DISP2A7MBM2 1401 aa24.27■■□□□ 1.48
VPS52-214ENST00000463486 HSP90AB2PQ58FF8 381 aa24.27■■□□□ 1.48
VPS52-214ENST00000463486 INSRP06213 1382 aa24.26■■□□□ 1.47
VPS52-214ENST00000463486 A0A0G2JS52 829 aa24.25■■□□□ 1.47
VPS52-214ENST00000463486 MYT1Q01538 1121 aa24.25■■□□□ 1.47
VPS52-214ENST00000463486 NLRP2Q9NX02 1062 aa24.25■■□□□ 1.47
VPS52-214ENST00000463486 FLT4P35916 1363 aa24.25■■□□□ 1.47
VPS52-214ENST00000463486 PARP4Q9UKK3 1724 aaKnown RBP24.24■■□□□ 1.47
VPS52-214ENST00000463486 LTV1Q96GA3 475 aaPredicted RBP24.24■■□□□ 1.47
VPS52-214ENST00000463486 MAP2P11137 1827 aaKnown RBP24.24■■□□□ 1.47
VPS52-214ENST00000463486 TNNT2P45379 298 aaPredicted RBP24.23■■□□□ 1.47
VPS52-214ENST00000463486 NPC1L1Q9UHC9 1359 aa24.23■■□□□ 1.47
VPS52-214ENST00000463486 FAM182BQ5T319 152 aa24.22■■□□□ 1.47
VPS52-214ENST00000463486 MORC1Q86VD1 984 aa24.22■■□□□ 1.47
VPS52-214ENST00000463486 WNK3Q9BYP7 1800 aa24.21■■□□□ 1.47
VPS52-214ENST00000463486 SMG6Q86US8 1419 aaKnown RBP24.2■■□□□ 1.46
VPS52-214ENST00000463486 NBPF6Q5VWK0 638 aa24.2■■□□□ 1.46
VPS52-214ENST00000463486 NBPF4Q96M43 638 aa24.2■■□□□ 1.46
VPS52-214ENST00000463486 CDCA7Q9BWT1 371 aaPredicted RBP24.2■■□□□ 1.46
VPS52-214ENST00000463486 LRRC37A3O60309 1634 aa24.19■■□□□ 1.46
VPS52-214ENST00000463486 FAM208AQ9UK61 1670 aaKnown RBP24.18■■□□□ 1.46
VPS52-214ENST00000463486 RGPD2P0DJD1 1756 aa24.18■■□□□ 1.46
VPS52-214ENST00000463486 PPM1GO15355 546 aaPredicted RBP24.17■■□□□ 1.46
VPS52-214ENST00000463486 PDE3BQ13370 1112 aa24.16■■□□□ 1.46
VPS52-214ENST00000463486 DDB1Q16531 1140 aa24.16■■□□□ 1.46
VPS52-214ENST00000463486 CC2D1BQ5T0F9 858 aaKnown RBP24.16■■□□□ 1.46
VPS52-214ENST00000463486 IL2RBP14784 551 aa24.14■■□□□ 1.45
VPS52-214ENST00000463486 CCDC125Q86Z20 511 aa24.14■■□□□ 1.45
VPS52-214ENST00000463486 MARCH10Q8NA82 808 aaPredicted RBP24.14■■□□□ 1.45
VPS52-214ENST00000463486 NCAPD2Q15021 1401 aa24.13■■□□□ 1.45
VPS52-214ENST00000463486 EIF4A2Q14240 407 aaKnown RBP24.12■■□□□ 1.45
VPS52-214ENST00000463486 FAM196AQ6ZSG2 479 aa24.12■■□□□ 1.45
VPS52-214ENST00000463486 EXOC5O00471 708 aa24.11■■□□□ 1.45
VPS52-214ENST00000463486 USHBP1Q8N6Y0 703 aa24.11■■□□□ 1.45
VPS52-214ENST00000463486 TNS2Q63HR2 1409 aa24.1■■□□□ 1.45
VPS52-214ENST00000463486 MEGF6O75095 1541 aa24.1■■□□□ 1.45
VPS52-214ENST00000463486 EYA1Q99502 592 aa24.09■■□□□ 1.45
VPS52-214ENST00000463486 BCL9O00512 1426 aa24.09■■□□□ 1.45
VPS52-214ENST00000463486 MTHFSP49914 203 aa24.07■■□□□ 1.44
VPS52-214ENST00000463486 OVOS2A0A0G2JMS6 1433 aa24.06■■□□□ 1.44
VPS52-214ENST00000463486 CNGB1Q14028 1251 aaPredicted RBP24.04■■□□□ 1.44
VPS52-214ENST00000463486 TRIM37O94972 964 aa24.03■■□□□ 1.44
VPS52-214ENST00000463486 IL13P35225 146 aa24.03■■□□□ 1.44
VPS52-214ENST00000463486 DDX10Q13206 875 aaKnown RBP24.03■■□□□ 1.44
VPS52-214ENST00000463486 DEFB132Q7Z7B7 95 aa24.03■■□□□ 1.44
VPS52-214ENST00000463486 IGSF1Q8N6C5 1336 aa24.03■■□□□ 1.44
VPS52-214ENST00000463486 TNS1Q9HBL0 1735 aaKnown RBP24.02■■□□□ 1.44
VPS52-214ENST00000463486 PTF1AQ7RTS3 328 aa24.02■■□□□ 1.44
VPS52-214ENST00000463486 SHANK3Q9BYB0 1731 aa24.01■■□□□ 1.43
VPS52-214ENST00000463486 ZCRB1Q8TBF4 217 aaKnown RBP24.01■■□□□ 1.43
VPS52-214ENST00000463486 RGPD1P0DJD0 1748 aa24.01■■□□□ 1.43
VPS52-214ENST00000463486 SBF2Q86WG5 1849 aa24■■□□□ 1.43
VPS52-214ENST00000463486 RAPGEF4Q8WZA2 1011 aa24■■□□□ 1.43
VPS52-214ENST00000463486 COL3A1P02461 1466 aaPredicted RBP23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms