RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 SMG6Q86US8 1419 aaKnown RBP14.61□□□□□ -0.07
UBR4-208ENST00000459947 COL5A2P05997 1499 aaPredicted RBP14.61□□□□□ -0.07
UBR4-208ENST00000459947 C11orf95C9JLR9 678 aaPredicted RBP14.61□□□□□ -0.07
UBR4-208ENST00000459947 CCDC9Q9Y3X0 531 aaKnown RBP14.61□□□□□ -0.07
UBR4-208ENST00000459947 CRB1P82279 1406 aa14.61□□□□□ -0.07
UBR4-208ENST00000459947 SPATA31A5Q5VU36 1347 aa14.6□□□□□ -0.07
UBR4-208ENST00000459947 SPATA31A7Q8IWB4 1347 aa14.6□□□□□ -0.07
UBR4-208ENST00000459947 IP6K1Q92551 441 aa14.6□□□□□ -0.07
UBR4-208ENST00000459947 GGNBP2Q9H3C7 697 aa14.6□□□□□ -0.07
UBR4-208ENST00000459947 CAMTA1Q9Y6Y1 1673 aa14.6□□□□□ -0.07
UBR4-208ENST00000459947 AMPHP49418 695 aa14.59□□□□□ -0.07
UBR4-208ENST00000459947 WDR17Q8IZU2 1322 aa14.59□□□□□ -0.07
UBR4-208ENST00000459947 CHRNA2Q15822 529 aa14.59□□□□□ -0.07
UBR4-208ENST00000459947 FLT4P35916 1363 aa14.59□□□□□ -0.07
UBR4-208ENST00000459947 BARGINQ6ZT62 677 aa14.59□□□□□ -0.07
UBR4-208ENST00000459947 ZBTB7CA1YPR0 619 aa14.58□□□□□ -0.07
UBR4-208ENST00000459947 GLI3P10071 1580 aa14.58□□□□□ -0.08
UBR4-208ENST00000459947 MORC1Q86VD1 984 aa14.58□□□□□ -0.08
UBR4-208ENST00000459947 ZRANB1Q9UGI0 708 aa14.57□□□□□ -0.08
UBR4-208ENST00000459947 SPATA31A1Q5TZJ5 1347 aa14.57□□□□□ -0.08
UBR4-208ENST00000459947 CSB-PGBD3P0DP91 1061 aa14.57□□□□□ -0.08
UBR4-208ENST00000459947 ONECUT3O60422 494 aaPredicted RBP14.56□□□□□ -0.08
UBR4-208ENST00000459947 TCP11L2Q8N4U5 519 aa14.56□□□□□ -0.08
UBR4-208ENST00000459947 STRN4Q9NRL3 753 aa14.56□□□□□ -0.08
UBR4-208ENST00000459947 CARD10Q9BWT7 1032 aa14.56□□□□□ -0.08
UBR4-208ENST00000459947 INSRP06213 1382 aa14.56□□□□□ -0.08
UBR4-208ENST00000459947 PLEKHG2Q9H7P9 1386 aa14.56□□□□□ -0.08
UBR4-208ENST00000459947 MAP3K19Q56UN5 1328 aa14.55□□□□□ -0.08
UBR4-208ENST00000459947 SOX12O15370 315 aa14.55□□□□□ -0.08
UBR4-208ENST00000459947 RGS12O14924 1447 aa14.55□□□□□ -0.08
UBR4-208ENST00000459947 TOM1L2Q6ZVM7 507 aa14.55□□□□□ -0.08
UBR4-208ENST00000459947 THSD7AQ9UPZ6 1657 aa14.54□□□□□ -0.08
UBR4-208ENST00000459947 HOXC9P31274 260 aa14.54□□□□□ -0.08
UBR4-208ENST00000459947 AMER1Q5JTC6 1135 aaPredicted RBP14.54□□□□□ -0.08
UBR4-208ENST00000459947 ERBB3P21860 1342 aa14.54□□□□□ -0.08
UBR4-208ENST00000459947 PER1O15534 1290 aaPredicted RBP14.53□□□□□ -0.08
UBR4-208ENST00000459947 WNK3Q9BYP7 1800 aa14.53□□□□□ -0.08
UBR4-208ENST00000459947 ANKRD24Q8TF21 1146 aa14.53□□□□□ -0.08
UBR4-208ENST00000459947 PARP4Q9UKK3 1724 aaKnown RBP14.52□□□□□ -0.09
UBR4-208ENST00000459947 LARP1Q6PKG0 1096 aaKnown RBP14.51□□□□□ -0.09
UBR4-208ENST00000459947 RGPD5Q99666 1765 aa14.51□□□□□ -0.09
UBR4-208ENST00000459947 SEPT12Q8IYM1 358 aa14.5□□□□□ -0.09
UBR4-208ENST00000459947 MAP2P11137 1827 aaKnown RBP14.5□□□□□ -0.09
UBR4-208ENST00000459947 SOCS7O14512 581 aa14.5□□□□□ -0.09
UBR4-208ENST00000459947 A0A0G2JS52 829 aa14.49□□□□□ -0.09
UBR4-208ENST00000459947 MYT1Q01538 1121 aa14.49□□□□□ -0.09
UBR4-208ENST00000459947 CCDC125Q86Z20 511 aa14.49□□□□□ -0.09
UBR4-208ENST00000459947 NLRP2Q9NX02 1062 aa14.49□□□□□ -0.09
UBR4-208ENST00000459947 ILDR2Q71H61 639 aa14.49□□□□□ -0.09
UBR4-208ENST00000459947 AXIN2Q9Y2T1 843 aa14.48□□□□□ -0.09
UBR4-208ENST00000459947 RRS1Q15050 365 aaKnown RBP14.48□□□□□ -0.09
UBR4-208ENST00000459947 FAM98CQ17RN3 349 aaKnown RBP14.48□□□□□ -0.09
UBR4-208ENST00000459947 KRT27Q7Z3Y8 459 aa14.48□□□□□ -0.09
UBR4-208ENST00000459947 CFAP53Q96M91 514 aa14.47□□□□□ -0.09
UBR4-208ENST00000459947 POLKQ9UBT6 870 aa14.47□□□□□ -0.09
UBR4-208ENST00000459947 DISP2A7MBM2 1401 aa14.47□□□□□ -0.09
UBR4-208ENST00000459947 PEAK1Q9H792 1746 aa14.47□□□□□ -0.09
UBR4-208ENST00000459947 ZNF316A6NFI3 1004 aaPredicted RBP14.47□□□□□ -0.09
UBR4-208ENST00000459947 PDE3BQ13370 1112 aa14.46□□□□□ -0.09
UBR4-208ENST00000459947 IL2RBP14784 551 aa14.46□□□□□ -0.09
UBR4-208ENST00000459947 RALBP1Q15311 655 aa14.46□□□□□ -0.1
UBR4-208ENST00000459947 NCAPD2Q15021 1401 aa14.45□□□□□ -0.1
UBR4-208ENST00000459947 TNS2Q63HR2 1409 aa14.45□□□□□ -0.1
UBR4-208ENST00000459947 EMILIN1Q9Y6C2 1016 aa14.45□□□□□ -0.1
UBR4-208ENST00000459947 DDB1Q16531 1140 aa14.44□□□□□ -0.1
UBR4-208ENST00000459947 CC2D1BQ5T0F9 858 aaKnown RBP14.44□□□□□ -0.1
UBR4-208ENST00000459947 BCL9O00512 1426 aa14.44□□□□□ -0.1
UBR4-208ENST00000459947 RAPGEF4Q8WZA2 1011 aa14.44□□□□□ -0.1
UBR4-208ENST00000459947 OVOS2A0A0G2JMS6 1433 aa14.44□□□□□ -0.1
UBR4-208ENST00000459947 LRRC37A3O60309 1634 aa14.44□□□□□ -0.1
UBR4-208ENST00000459947 FAM196AQ6ZSG2 479 aa14.43□□□□□ -0.1
UBR4-208ENST00000459947 EXOC5O00471 708 aa14.43□□□□□ -0.1
UBR4-208ENST00000459947 PPM1GO15355 546 aaPredicted RBP14.43□□□□□ -0.1
UBR4-208ENST00000459947 TATP17735 454 aaPredicted RBP14.43□□□□□ -0.1
UBR4-208ENST00000459947 BRWD3Q6RI45 1802 aa14.43□□□□□ -0.1
UBR4-208ENST00000459947 LTV1Q96GA3 475 aaPredicted RBP14.43□□□□□ -0.1
UBR4-208ENST00000459947 USP35Q9P2H5 1018 aa14.42□□□□□ -0.1
UBR4-208ENST00000459947 HSP90AB2PQ58FF8 381 aa14.42□□□□□ -0.1
UBR4-208ENST00000459947 TNNT2P45379 298 aaPredicted RBP14.41□□□□□ -0.1
UBR4-208ENST00000459947 SF3B2Q13435 895 aaKnown RBP14.41□□□□□ -0.1
UBR4-208ENST00000459947 RGPD1P0DJD0 1748 aa14.41□□□□□ -0.1
UBR4-208ENST00000459947 PARD3Q8TEW0 1356 aa14.41□□□□□ -0.1
UBR4-208ENST00000459947 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.41□□□□□ -0.17e-14■■□□□ 11.4
UBR4-208ENST00000459947 NUDCQ9Y266 331 aa14.41□□□□□ -0.1
UBR4-208ENST00000459947 HMGB2P26583 209 aaKnown RBP14.4□□□□□ -0.1
UBR4-208ENST00000459947 IGSF1Q8N6C5 1336 aa14.39□□□□□ -0.11
UBR4-208ENST00000459947 DDX10Q13206 875 aaKnown RBP14.39□□□□□ -0.11
UBR4-208ENST00000459947 DIAPH1O60610 1272 aaKnown RBP14.39□□□□□ -0.11
UBR4-208ENST00000459947 MTHFSP49914 203 aa14.39□□□□□ -0.11
UBR4-208ENST00000459947 EIF4A2Q14240 407 aaKnown RBP14.39□□□□□ -0.11
UBR4-208ENST00000459947 SPG7Q9UQ90 795 aa14.39□□□□□ -0.11
UBR4-208ENST00000459947 NBPF6Q5VWK0 638 aa14.38□□□□□ -0.11
UBR4-208ENST00000459947 NBPF4Q96M43 638 aa14.38□□□□□ -0.11
UBR4-208ENST00000459947 FBLN1P23142 703 aa14.37□□□□□ -0.11
UBR4-208ENST00000459947 PPP2R1AP30153 589 aa14.37□□□□□ -0.11
UBR4-208ENST00000459947 ZCRB1Q8TBF4 217 aaKnown RBP14.37□□□□□ -0.11
UBR4-208ENST00000459947 PKD1L3Q7Z443 1732 aa14.37□□□□□ -0.11
UBR4-208ENST00000459947 PCDH11XQ9BZA7 1347 aa14.37□□□□□ -0.11
UBR4-208ENST00000459947 PCDH11YQ9BZA8 1340 aa14.37□□□□□ -0.11
UBR4-208ENST00000459947 RGPD2P0DJD1 1756 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms