RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, human

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-210	ENST00000457373	ATRN	O75882	1429 aa		13.93	□□□□□ -0.18
RFX3-210	ENST00000457373	CARD14	Q9BXL6	1004 aa		13.93	□□□□□ -0.18
RFX3-210	ENST00000457373	STRN4	Q9NRL3	753 aa		13.93	□□□□□ -0.18
RFX3-210	ENST00000457373	EVA1C	P58658	441 aa		13.92	□□□□□ -0.18
RFX3-210	ENST00000457373	COG3	Q96JB2	828 aa		13.92	□□□□□ -0.18
RFX3-210	ENST00000457373	GJD4	Q96KN9	370 aa	Predicted RBP	13.92	□□□□□ -0.18
RFX3-210	ENST00000457373	GGNBP2	Q9H3C7	697 aa		13.92	□□□□□ -0.18
RFX3-210	ENST00000457373	NRAP	Q86VF7	1730 aa		13.92	□□□□□ -0.18
RFX3-210	ENST00000457373	KIF7	Q2M1P5	1343 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	NSD3	Q9BZ95	1437 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	FYB1	O15117	783 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	VPS72	Q15906	364 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	PANK3	Q9H999	370 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	KIF20B	Q96Q89	1820 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	CPD	O75976	1380 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	USP54	Q70EL1	1684 aa		13.91	□□□□□ -0.18
RFX3-210	ENST00000457373	RGPD5	Q99666	1765 aa		13.9	□□□□□ -0.18
RFX3-210	ENST00000457373	OVOS2	A0A0J9YW53	1432 aa		13.9	□□□□□ -0.19
RFX3-210	ENST00000457373	OVOS2	Q6IE36	1432 aa		13.9	□□□□□ -0.19
RFX3-210	ENST00000457373	CAMTA1	Q9Y6Y1	1673 aa		13.89	□□□□□ -0.19
RFX3-210	ENST00000457373	ARHGEF25	Q86VW2	580 aa		13.89	□□□□□ -0.19
RFX3-210	ENST00000457373	LMO7	Q8WWI1	1683 aa		13.88	□□□□□ -0.19
RFX3-210	ENST00000457373	GLI3	P10071	1580 aa		13.88	□□□□□ -0.19
RFX3-210	ENST00000457373	FBLN1	P23142	703 aa		13.88	□□□□□ -0.19
RFX3-210	ENST00000457373	NFAT5	O94916	1531 aa		13.88	□□□□□ -0.19
RFX3-210	ENST00000457373	LTN1	O94822	1766 aa		13.88	□□□□□ -0.19
RFX3-210	ENST00000457373	COL18A1	P39060	1754 aa		13.88	□□□□□ -0.19
RFX3-210	ENST00000457373	AATK	Q6ZMQ8	1374 aa		13.87	□□□□□ -0.19
RFX3-210	ENST00000457373	ZEB1	P37275	1124 aa	Predicted RBP	13.87	□□□□□ -0.19
RFX3-210	ENST00000457373	AXIN2	Q9Y2T1	843 aa		13.87	□□□□□ -0.19
RFX3-210	ENST00000457373	RGS12	O14924	1447 aa		13.87	□□□□□ -0.19
RFX3-210	ENST00000457373	CCDC7	Q96M83	1385 aa		13.86	□□□□□ -0.19
RFX3-210	ENST00000457373	SOCS7	O14512	581 aa		13.86	□□□□□ -0.19
RFX3-210	ENST00000457373	LARP1	Q6PKG0	1096 aa	Known RBP	13.86	□□□□□ -0.19
RFX3-210	ENST00000457373	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.86	□□□□□ -0.19
RFX3-210	ENST00000457373	USP35	Q9P2H5	1018 aa		13.86	□□□□□ -0.19
RFX3-210	ENST00000457373	CGNL1	Q0VF96	1302 aa		13.86	□□□□□ -0.19
RFX3-210	ENST00000457373	WASHC2A	Q641Q2	1341 aa		13.86	□□□□□ -0.19
RFX3-210	ENST00000457373	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.86	□□□□□ -0.19
RFX3-210	ENST00000457373		A0A0G2JS52	829 aa		13.85	□□□□□ -0.19
RFX3-210	ENST00000457373	MYT1	Q01538	1121 aa		13.85	□□□□□ -0.19
RFX3-210	ENST00000457373	SPATA31A5	Q5VU36	1347 aa		13.85	□□□□□ -0.19
RFX3-210	ENST00000457373	SPATA31A7	Q8IWB4	1347 aa		13.85	□□□□□ -0.19
RFX3-210	ENST00000457373	CSB-PGBD3	P0DP91	1061 aa		13.84	□□□□□ -0.19
RFX3-210	ENST00000457373	FAM98C	Q17RN3	349 aa	Known RBP	13.84	□□□□□ -0.19
RFX3-210	ENST00000457373	COL5A2	P05997	1499 aa	Predicted RBP	13.84	□□□□□ -0.19
RFX3-210	ENST00000457373	AMPH	P49418	695 aa		13.83	□□□□□ -0.2
RFX3-210	ENST00000457373	POLA2	Q14181	598 aa		13.83	□□□□□ -0.2
RFX3-210	ENST00000457373	RRS1	Q15050	365 aa	Known RBP	13.83	□□□□□ -0.2
RFX3-210	ENST00000457373	TOM1L2	Q6ZVM7	507 aa		13.83	□□□□□ -0.2
RFX3-210	ENST00000457373	SEPT12	Q8IYM1	358 aa		13.83	□□□□□ -0.2
RFX3-210	ENST00000457373	KNSTRN	Q9Y448	316 aa		13.83	□□□□□ -0.2
RFX3-210	ENST00000457373	SPATA31A1	Q5TZJ5	1347 aa		13.83	□□□□□ -0.2
RFX3-210	ENST00000457373	BRWD3	Q6RI45	1802 aa		13.82	□□□□□ -0.2
RFX3-210	ENST00000457373	MAP3K19	Q56UN5	1328 aa		13.82	□□□□□ -0.2
RFX3-210	ENST00000457373	ANKRD26	Q9UPS8	1709 aa		13.81	□□□□□ -0.2
RFX3-210	ENST00000457373	TNNT2	P45379	298 aa	Predicted RBP	13.81	□□□□□ -0.2
RFX3-210	ENST00000457373	IP6K1	Q92551	441 aa		13.81	□□□□□ -0.2
RFX3-210	ENST00000457373	LTV1	Q96GA3	475 aa	Predicted RBP	13.81	□□□□□ -0.2
RFX3-210	ENST00000457373	WDR17	Q8IZU2	1322 aa		13.81	□□□□□ -0.2
RFX3-210	ENST00000457373	CRB1	P82279	1406 aa		13.81	□□□□□ -0.2
RFX3-210	ENST00000457373	MAP2	P11137	1827 aa	Known RBP	13.8	□□□□□ -0.2
RFX3-210	ENST00000457373	ONECUT3	O60422	494 aa	Predicted RBP	13.8	□□□□□ -0.2
RFX3-210	ENST00000457373	CNGB1	Q14028	1251 aa	Predicted RBP	13.8	□□□□□ -0.2
RFX3-210	ENST00000457373	ANKRD24	Q8TF21	1146 aa		13.8	□□□□□ -0.2
RFX3-210	ENST00000457373	HOXC9	P31274	260 aa		13.79	□□□□□ -0.2
RFX3-210	ENST00000457373	MORC1	Q86VD1	984 aa		13.79	□□□□□ -0.2
RFX3-210	ENST00000457373	TCP11L2	Q8N4U5	519 aa		13.79	□□□□□ -0.2
RFX3-210	ENST00000457373	ABCC6	O95255	1503 aa		13.79	□□□□□ -0.2
RFX3-210	ENST00000457373	PPM1G	O15355	546 aa	Predicted RBP	13.78	□□□□□ -0.2
RFX3-210	ENST00000457373	NLRP2	Q9NX02	1062 aa		13.78	□□□□□ -0.2
RFX3-210	ENST00000457373	THRAP3	Q9Y2W1	955 aa	Known RBP	13.78	□□□□□ -0.2
RFX3-210	ENST00000457373	EMILIN1	Q9Y6C2	1016 aa		13.78	□□□□□ -0.2
RFX3-210	ENST00000457373	PER1	O15534	1290 aa	Predicted RBP	13.77	□□□□□ -0.21
RFX3-210	ENST00000457373	NSD2	O96028	1365 aa		13.77	□□□□□ -0.21
RFX3-210	ENST00000457373	ERBB3	P21860	1342 aa		13.77	□□□□□ -0.21
RFX3-210	ENST00000457373	BLM	P54132	1417 aa	Predicted RBP	13.77	□□□□□ -0.21
RFX3-210	ENST00000457373	BARGIN	Q6ZT62	677 aa		13.77	□□□□□ -0.21
RFX3-210	ENST00000457373	CC2D1B	Q5T0F9	858 aa	Known RBP	13.76	□□□□□ -0.21
RFX3-210	ENST00000457373	KRT27	Q7Z3Y8	459 aa		13.76	□□□□□ -0.21
RFX3-210	ENST00000457373	CARD10	Q9BWT7	1032 aa		13.76	□□□□□ -0.21
RFX3-210	ENST00000457373	RGPD2	P0DJD1	1756 aa		13.76	□□□□□ -0.21
RFX3-210	ENST00000457373	PEAK1	Q9H792	1746 aa		13.76	□□□□□ -0.21
RFX3-210	ENST00000457373	THSD7A	Q9UPZ6	1657 aa		13.75	□□□□□ -0.21
RFX3-210	ENST00000457373	HSP90AB2P	Q58FF8	381 aa		13.75	□□□□□ -0.21
RFX3-210	ENST00000457373	POLK	Q9UBT6	870 aa		13.75	□□□□□ -0.21
RFX3-210	ENST00000457373	RTL1	A6NKG5	1358 aa		13.74	□□□□□ -0.21
RFX3-210	ENST00000457373	FAM182B	Q5T319	152 aa		13.74	□□□□□ -0.21
RFX3-210	ENST00000457373	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.74	□□□□□ -0.21
RFX3-210	ENST00000457373	WNK3	Q9BYP7	1800 aa		13.74	□□□□□ -0.21
RFX3-210	ENST00000457373	FLT4	P35916	1363 aa		13.73	□□□□□ -0.21
RFX3-210	ENST00000457373	PDE3B	Q13370	1112 aa		13.73	□□□□□ -0.21
RFX3-210	ENST00000457373	FAM208A	Q9UK61	1670 aa	Known RBP	13.72	□□□□□ -0.21
RFX3-210	ENST00000457373	INSR	P06213	1382 aa		13.71	□□□□□ -0.21
RFX3-210	ENST00000457373	KIF24	Q5T7B8	1368 aa		13.71	□□□□□ -0.21
RFX3-210	ENST00000457373	PARP4	Q9UKK3	1724 aa	Known RBP	13.71	□□□□□ -0.21
RFX3-210	ENST00000457373	DDB1	Q16531	1140 aa		13.71	□□□□□ -0.21
RFX3-210	ENST00000457373	SMG6	Q86US8	1419 aa	Known RBP	13.71	□□□□□ -0.22
RFX3-210	ENST00000457373	EXOC5	O00471	708 aa		13.7	□□□□□ -0.22
RFX3-210	ENST00000457373	DDX10	Q13206	875 aa	Known RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms