RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SEPT11Q9NVA2 429 aaKnown RBP8.1□□□□□ -1.11
SCN1A-204ENST00000423058 COG6Q9Y2V7 657 aa8.1□□□□□ -1.11
SCN1A-204ENST00000423058 PPM1EQ8WY54 764 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 TSPYL1Q9H0U9 437 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 TTLL12Q14166 644 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-204ENST00000423058 CEP131Q9UPN4 1083 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 PABPN1LA6NDY0 278 aaKnown RBP8.09□□□□□ -1.11
SCN1A-204ENST00000423058 CBFA2T2O43439 604 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 STK38Q15208 465 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 TRIM5Q9C035 493 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 HMOX1P09601 288 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 SLF2Q8IX21 1173 aa8.09□□□□□ -1.11
SCN1A-204ENST00000423058 CCDC7Q96M83 1385 aa8.09□□□□□ -1.12
SCN1A-204ENST00000423058 GNAI2P04899 355 aa8.09□□□□□ -1.12
SCN1A-204ENST00000423058 PDIA4P13667 645 aaKnown RBP8.09□□□□□ -1.12
SCN1A-204ENST00000423058 IGHMBP2P38935 993 aaKnown RBP8.09□□□□□ -1.12
SCN1A-204ENST00000423058 ZPR1O75312 459 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 GSE1Q14687 1217 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 SLC26A8Q96RN1 970 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 AEBP1Q8IUX7 1158 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 SERPINC1P01008 464 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 UBAC1Q9BSL1 405 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 CTNNA3Q9UI47 895 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 STARD3NLO95772 234 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 MBD3O95983 291 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 FERMT1Q9BQL6 677 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 ZBED9Q6R2W3 1325 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 MYOM3Q5VTT5 1437 aa8.08□□□□□ -1.12
SCN1A-204ENST00000423058 ATP2B1P20020 1258 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 TDO2P48775 406 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 CRBNQ96SW2 442 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 EIF3JO75822 258 aaKnown RBP8.07□□□□□ -1.12
SCN1A-204ENST00000423058 CEP57L1Q8IYX8 460 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 SURF6O75683 361 aaKnown RBP8.07□□□□□ -1.12
SCN1A-204ENST00000423058 SSR1P43307 286 aaKnown RBP8.07□□□□□ -1.12
SCN1A-204ENST00000423058 NUTM2GQ5VZR2 741 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 PIP4K2BP78356 416 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 LRRC45Q96CN5 670 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 CCDC66A2RUB6 948 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 APAF1O14727 1248 aa8.07□□□□□ -1.12
SCN1A-204ENST00000423058 FGFR1OPO95684 399 aaKnown RBP8.07□□□□□ -1.12
SCN1A-204ENST00000423058 CCT4P50991 539 aaKnown RBP8.07□□□□□ -1.12
SCN1A-204ENST00000423058 MTHFSP49914 203 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 CUL5Q93034 780 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 SRCIN1Q9C0H9 1055 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 PDE4AP27815 886 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 NF2P35240 595 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 CNTLNQ9NXG0 1405 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 ZNF710Q8N1W2 664 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 C22orf23Q9BZE7 217 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 SSX2IPQ9Y2D8 614 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 CADPSQ9ULU8 1353 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 ERLIN1O75477 346 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 TAX1BP1Q86VP1 789 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 TXNDC2Q86VQ3 553 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 ZNF692Q9BU19 519 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-204ENST00000423058 ANKRD18BA2A2Z9 1011 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 IBSPP21815 317 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-204ENST00000423058 DDX54Q8TDD1 881 aaKnown RBP8.06□□□□□ -1.12
SCN1A-204ENST00000423058 PLCD4Q9BRC7 762 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 LRP2BPQ9P2M1 347 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 FANCD2Q9BXW9 1451 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 VPS36Q86VN1 386 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 CRACR2BQ8N4Y2 399 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-204ENST00000423058 RAB34Q9BZG1 259 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 CFAP45Q9UL16 551 aa8.06□□□□□ -1.12
SCN1A-204ENST00000423058 KDM4AO75164 1064 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 CAVIN4Q5BKX8 364 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 CYP46A1Q9Y6A2 500 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 NUP133Q8WUM0 1156 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 FAM43AQ8N2R8 423 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 FERMT2Q96AC1 680 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 NASPP49321 788 aaPredicted RBP8.05□□□□□ -1.12
SCN1A-204ENST00000423058 CAVIN1Q6NZI2 390 aaKnown RBP8.05□□□□□ -1.12
SCN1A-204ENST00000423058 LNPKQ9C0E8 428 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 SSBP05455 408 aaKnown RBP eCLIP8.05□□□□□ -1.12
SCN1A-204ENST00000423058 TAF4BQ92750 862 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 TSG101Q99816 390 aa8.05□□□□□ -1.12
SCN1A-204ENST00000423058 GOLGA6L10A0A0M3HER8 536 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 ANKLE2Q86XL3 938 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 C16orf71Q8IYS4 520 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-204ENST00000423058 TSPY26PQ9H489 355 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 COMMD10Q9Y6G5 202 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 SMARCA4P51532 1647 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 GAPVD1Q14C86 1478 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 USP5P45974 858 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 SUPT6HQ7KZ85 1726 aaKnown RBP8.04□□□□□ -1.12
SCN1A-204ENST00000423058 CCDC192P0DO97 292 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 KRT32Q14532 448 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 KIAA1328Q86T90 577 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 CENPHQ9H3R5 247 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 MYCNP04198 464 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-204ENST00000423058 ME1P48163 572 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 FKBP4Q02790 459 aaKnown RBP eCLIP8.04□□□□□ -1.12
SCN1A-204ENST00000423058 KANK4Q5T7N3 995 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-204ENST00000423058 HOOK3Q86VS8 718 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 ANKIB1Q9P2G1 1089 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 ATF7IPQ6VMQ6 1270 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 AKAP2Q9Y2D5 859 aa8.04□□□□□ -1.12
SCN1A-204ENST00000423058 PIBF1Q8WXW3 757 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms