RNA–Protein interactions for RNA: ENST00000397411.6

TSPAN4-207, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TSPAN4, Length 1,025 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-207ENST00000397411 LARP1Q6PKG0 1096 aaKnown RBP34.83■■■■□ 3.17
TSPAN4-207ENST00000397411 USP35Q9P2H5 1018 aa34.83■■■■□ 3.17
TSPAN4-207ENST00000397411 LMO7Q8WWI1 1683 aa34.82■■■■□ 3.17
TSPAN4-207ENST00000397411 CSB-PGBD3P0DP91 1061 aa34.82■■■■□ 3.16
TSPAN4-207ENST00000397411 AXIN2Q9Y2T1 843 aa34.82■■■■□ 3.16
TSPAN4-207ENST00000397411 KNSTRNQ9Y448 316 aa34.82■■■■□ 3.16
TSPAN4-207ENST00000397411 RGS12O14924 1447 aa34.81■■■■□ 3.16
TSPAN4-207ENST00000397411 GLI3P10071 1580 aa34.81■■■■□ 3.16
TSPAN4-207ENST00000397411 FAM98CQ17RN3 349 aaKnown RBP34.8■■■■□ 3.16
TSPAN4-207ENST00000397411 WASHC2AQ641Q2 1341 aa34.8■■■■□ 3.16
TSPAN4-207ENST00000397411 AMPHP49418 695 aa34.79■■■■□ 3.16
TSPAN4-207ENST00000397411 LTN1O94822 1766 aa34.79■■■■□ 3.16
TSPAN4-207ENST00000397411 COL18A1P39060 1754 aa34.78■■■■□ 3.16
TSPAN4-207ENST00000397411 FBLN1P23142 703 aa34.78■■■■□ 3.16
TSPAN4-207ENST00000397411 TOM1L2Q6ZVM7 507 aa34.78■■■■□ 3.16
TSPAN4-207ENST00000397411 SPATA31A1Q5TZJ5 1347 aa34.78■■■■□ 3.16
TSPAN4-207ENST00000397411 COL5A2P05997 1499 aaPredicted RBP34.78■■■■□ 3.16
TSPAN4-207ENST00000397411 RGPD5Q99666 1765 aa34.77■■■■□ 3.16
TSPAN4-207ENST00000397411 SEPT12Q8IYM1 358 aa34.77■■■■□ 3.16
TSPAN4-207ENST00000397411 ONECUT3O60422 494 aaPredicted RBP34.73■■■■□ 3.15
TSPAN4-207ENST00000397411 RRS1Q15050 365 aaKnown RBP34.73■■■■□ 3.15
TSPAN4-207ENST00000397411 IP6K1Q92551 441 aa34.73■■■■□ 3.15
TSPAN4-207ENST00000397411 MAP3K19Q56UN5 1328 aa34.73■■■■□ 3.15
TSPAN4-207ENST00000397411 TCP11L2Q8N4U5 519 aa34.72■■■■□ 3.15
TSPAN4-207ENST00000397411 WDR17Q8IZU2 1322 aa34.72■■■■□ 3.15
TSPAN4-207ENST00000397411 CRB1P82279 1406 aa34.71■■■■□ 3.15
TSPAN4-207ENST00000397411 ABCC6O95255 1503 aa34.7■■■■□ 3.14
TSPAN4-207ENST00000397411 LTV1Q96GA3 475 aaPredicted RBP34.69■■■■□ 3.14
TSPAN4-207ENST00000397411 TNNT2P45379 298 aaPredicted RBP34.68■■■■□ 3.14
TSPAN4-207ENST00000397411 ANKRD24Q8TF21 1146 aa34.68■■■■□ 3.14
TSPAN4-207ENST00000397411 THRAP3Q9Y2W1 955 aaKnown RBP34.68■■■■□ 3.14
TSPAN4-207ENST00000397411 MORC1Q86VD1 984 aa34.67■■■■□ 3.14
TSPAN4-207ENST00000397411 NSD2O96028 1365 aa34.66■■■■□ 3.14
TSPAN4-207ENST00000397411 HOXC9P31274 260 aa34.66■■■■□ 3.14
TSPAN4-207ENST00000397411 NLRP2Q9NX02 1062 aa34.66■■■■□ 3.14
TSPAN4-207ENST00000397411 PPM1GO15355 546 aaPredicted RBP34.65■■■■□ 3.14
TSPAN4-207ENST00000397411 BARGINQ6ZT62 677 aa34.65■■■■□ 3.14
TSPAN4-207ENST00000397411 CARD10Q9BWT7 1032 aa34.64■■■■□ 3.14
TSPAN4-207ENST00000397411 BLMP54132 1417 aaPredicted RBP34.64■■■■□ 3.14
TSPAN4-207ENST00000397411 ERBB3P21860 1342 aa34.62■■■■□ 3.13
TSPAN4-207ENST00000397411 ANKRD26Q9UPS8 1709 aa34.62■■■■□ 3.13
TSPAN4-207ENST00000397411 KRT27Q7Z3Y8 459 aa34.62■■■■□ 3.13
TSPAN4-207ENST00000397411 BRWD3Q6RI45 1802 aa34.61■■■■□ 3.13
TSPAN4-207ENST00000397411 RTL1A6NKG5 1358 aa34.6■■■■□ 3.13
TSPAN4-207ENST00000397411 PER1O15534 1290 aaPredicted RBP34.59■■■■□ 3.13
TSPAN4-207ENST00000397411 CNGB1Q14028 1251 aaPredicted RBP34.59■■■■□ 3.13
TSPAN4-207ENST00000397411 EMILIN1Q9Y6C2 1016 aa34.59■■■■□ 3.13
TSPAN4-207ENST00000397411 MAP2P11137 1827 aaKnown RBP34.59■■■■□ 3.13
TSPAN4-207ENST00000397411 AMER1Q5JTC6 1135 aaPredicted RBP34.58■■■■□ 3.13
TSPAN4-207ENST00000397411 PDE3BQ13370 1112 aa34.57■■■■□ 3.12
TSPAN4-207ENST00000397411 CC2D1BQ5T0F9 858 aaKnown RBP34.56■■■■□ 3.12
TSPAN4-207ENST00000397411 FLT4P35916 1363 aa34.55■■■■□ 3.12
TSPAN4-207ENST00000397411 KIF24Q5T7B8 1368 aa34.55■■■■□ 3.12
TSPAN4-207ENST00000397411 HSP90AB2PQ58FF8 381 aa34.54■■■■□ 3.12
TSPAN4-207ENST00000397411 CDCA7Q9BWT1 371 aaPredicted RBP34.54■■■■□ 3.12
TSPAN4-207ENST00000397411 POLKQ9UBT6 870 aa34.54■■■■□ 3.12
TSPAN4-207ENST00000397411 SMG6Q86US8 1419 aaKnown RBP34.53■■■■□ 3.12
TSPAN4-207ENST00000397411 THSD7AQ9UPZ6 1657 aa34.52■■■■□ 3.12
TSPAN4-207ENST00000397411 UPF1Q92900 1129 aaKnown RBP eCLIP34.52■■■■□ 3.123e-9■■■■■ 35.5
TSPAN4-207ENST00000397411 INSRP06213 1382 aa34.5■■■■□ 3.11
TSPAN4-207ENST00000397411 DDB1Q16531 1140 aa34.48■■■■□ 3.11
TSPAN4-207ENST00000397411 PEAK1Q9H792 1746 aa34.47■■■■□ 3.11
TSPAN4-207ENST00000397411 FAM182BQ5T319 152 aa34.46■■■■□ 3.11
TSPAN4-207ENST00000397411 FAM208AQ9UK61 1670 aaKnown RBP34.46■■■■□ 3.11
TSPAN4-207ENST00000397411 EXOC5O00471 708 aa34.45■■■■□ 3.11
TSPAN4-207ENST00000397411 IL2RBP14784 551 aa34.45■■■■□ 3.11
TSPAN4-207ENST00000397411 NPC1L1Q9UHC9 1359 aa34.42■■■■□ 3.1
TSPAN4-207ENST00000397411 PARP4Q9UKK3 1724 aaKnown RBP34.41■■■■□ 3.1
TSPAN4-207ENST00000397411 NBPF6Q5VWK0 638 aa34.41■■■■□ 3.1
TSPAN4-207ENST00000397411 NBPF4Q96M43 638 aa34.41■■■■□ 3.1
TSPAN4-207ENST00000397411 RGPD2P0DJD1 1756 aa34.41■■■■□ 3.1
TSPAN4-207ENST00000397411 WNK3Q9BYP7 1800 aa34.39■■■■□ 3.1
TSPAN4-207ENST00000397411 DDX10Q13206 875 aaKnown RBP34.39■■■■□ 3.1
TSPAN4-207ENST00000397411 SF3B2Q13435 895 aaKnown RBP34.39■■■■□ 3.1
TSPAN4-207ENST00000397411 FAM196AQ6ZSG2 479 aa34.39■■■■□ 3.1
TSPAN4-207ENST00000397411 CCDC125Q86Z20 511 aa34.39■■■■□ 3.1
TSPAN4-207ENST00000397411 USHBP1Q8N6Y0 703 aa34.39■■■■□ 3.1
TSPAN4-207ENST00000397411 DISP2A7MBM2 1401 aa34.36■■■■□ 3.09
TSPAN4-207ENST00000397411 RAPGEF4Q8WZA2 1011 aa34.35■■■■□ 3.09
TSPAN4-207ENST00000397411 MTHFSP49914 203 aa34.34■■■■□ 3.09
TSPAN4-207ENST00000397411 EIF4A2Q14240 407 aaKnown RBP34.33■■■■□ 3.09
TSPAN4-207ENST00000397411 LRRC37A3O60309 1634 aa34.33■■■■□ 3.09
TSPAN4-207ENST00000397411 TATP17735 454 aaPredicted RBP34.31■■■■□ 3.08
TSPAN4-207ENST00000397411 EYA1Q99502 592 aa34.3■■■■□ 3.08
TSPAN4-207ENST00000397411 MARCH10Q8NA82 808 aaPredicted RBP34.29■■■■□ 3.08
TSPAN4-207ENST00000397411 DDX54Q8TDD1 881 aaKnown RBP34.27■■■■□ 3.08
TSPAN4-207ENST00000397411 TRIM37O94972 964 aa34.26■■■■□ 3.08
TSPAN4-207ENST00000397411 ZCRB1Q8TBF4 217 aaKnown RBP34.26■■■■□ 3.08
TSPAN4-207ENST00000397411 OVOS2A0A0G2JMS6 1433 aa34.26■■■■□ 3.07
TSPAN4-207ENST00000397411 TNS2Q63HR2 1409 aa34.25■■■■□ 3.07
TSPAN4-207ENST00000397411 ZNF316A6NFI3 1004 aaPredicted RBP34.23■■■■□ 3.07
TSPAN4-207ENST00000397411 MEGF6O75095 1541 aa34.2■■■■□ 3.06
TSPAN4-207ENST00000397411 KAT6BQ8WYB5 2073 aa34.19■■■■□ 3.06
TSPAN4-207ENST00000397411 BAG6P46379 1132 aa34.19■■■■□ 3.06
TSPAN4-207ENST00000397411 CFAP53Q96M91 514 aa34.19■■■■□ 3.06
TSPAN4-207ENST00000397411 DIAPH1O60610 1272 aaKnown RBP34.18■■■■□ 3.06
TSPAN4-207ENST00000397411 RGPD1P0DJD0 1748 aa34.18■■■■□ 3.06
TSPAN4-207ENST00000397411 PPP2R1AP30153 589 aa34.17■■■■□ 3.06
TSPAN4-207ENST00000397411 IL13P35225 146 aa34.17■■■■□ 3.06
TSPAN4-207ENST00000397411 APBA3O96018 575 aa34.16■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms