RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 ARHGEF25Q86VW2 580 aa19.47■□□□□ 0.71
SEC13-204ENST00000397099 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.47■□□□□ 0.71
SEC13-204ENST00000397099 TCP11L2Q8N4U5 519 aa19.47■□□□□ 0.71
SEC13-204ENST00000397099 ANKRD36BQ8N2N9 1353 aa19.46■□□□□ 0.71
SEC13-204ENST00000397099 CRB1P82279 1406 aa19.46■□□□□ 0.71
SEC13-204ENST00000397099 PDE3BQ13370 1112 aa19.46■□□□□ 0.71
SEC13-204ENST00000397099 COL18A1P39060 1754 aa19.46■□□□□ 0.71
SEC13-204ENST00000397099 NFAT5O94916 1531 aa19.46■□□□□ 0.71
SEC13-204ENST00000397099 SOX12O15370 315 aa19.45■□□□□ 0.7
SEC13-204ENST00000397099 C11orf95C9JLR9 678 aaPredicted RBP19.44■□□□□ 0.7
SEC13-204ENST00000397099 FAM196AQ6ZSG2 479 aa19.44■□□□□ 0.7
SEC13-204ENST00000397099 SRCAPQ6ZRS2 3230 aa19.44■□□□□ 0.7
SEC13-204ENST00000397099 EN1Q05925 392 aaPredicted RBP19.43■□□□□ 0.7
SEC13-204ENST00000397099 RGPD1P0DJD0 1748 aa19.42■□□□□ 0.7
SEC13-204ENST00000397099 TRIM37O94972 964 aa19.42■□□□□ 0.7
SEC13-204ENST00000397099 WDR17Q8IZU2 1322 aa19.42■□□□□ 0.7
SEC13-204ENST00000397099 EIF4G2P78344 907 aaKnown RBP eCLIP19.41■□□□□ 0.7
SEC13-204ENST00000397099 NME9Q86XW9 330 aa19.41■□□□□ 0.7
SEC13-204ENST00000397099 CDCA7Q9BWT1 371 aaPredicted RBP19.41■□□□□ 0.7
SEC13-204ENST00000397099 OVOS2A0A0J9YW53 1432 aa19.41■□□□□ 0.7
SEC13-204ENST00000397099 OVOS2Q6IE36 1432 aa19.41■□□□□ 0.7
SEC13-204ENST00000397099 PARP4Q9UKK3 1724 aaKnown RBP19.4■□□□□ 0.7
SEC13-204ENST00000397099 TOM1L2Q6ZVM7 507 aa19.4■□□□□ 0.7
SEC13-204ENST00000397099 LTN1O94822 1766 aa19.39■□□□□ 0.7
SEC13-204ENST00000397099 COG3Q96JB2 828 aa19.39■□□□□ 0.69
SEC13-204ENST00000397099 RGPD5Q99666 1765 aa19.39■□□□□ 0.69
SEC13-204ENST00000397099 CSB-PGBD3P0DP91 1061 aa19.38■□□□□ 0.69
SEC13-204ENST00000397099 PSDA5PKW4 1024 aaPredicted RBP19.37■□□□□ 0.69
SEC13-204ENST00000397099 CARD10Q9BWT7 1032 aa19.37■□□□□ 0.69
SEC13-204ENST00000397099 AXIN2Q9Y2T1 843 aa19.37■□□□□ 0.69
SEC13-204ENST00000397099 APBA3O96018 575 aa19.36■□□□□ 0.69
SEC13-204ENST00000397099 TNS1Q9HBL0 1735 aaKnown RBP19.36■□□□□ 0.69
SEC13-204ENST00000397099 CCDC7Q96M83 1385 aa19.35■□□□□ 0.69
SEC13-204ENST00000397099 EZH2Q15910 746 aaKnown RBP19.35■□□□□ 0.69
SEC13-204ENST00000397099 WNK3Q9BYP7 1800 aa19.35■□□□□ 0.69
SEC13-204ENST00000397099 DISP2A7MBM2 1401 aa19.34■□□□□ 0.69
SEC13-204ENST00000397099 MYOM1P52179 1685 aa19.34■□□□□ 0.69
SEC13-204ENST00000397099 ERBB3P21860 1342 aa19.33■□□□□ 0.69
SEC13-204ENST00000397099 DDB1Q16531 1140 aa19.33■□□□□ 0.68
SEC13-204ENST00000397099 FAM208AQ9UK61 1670 aaKnown RBP19.33■□□□□ 0.68
SEC13-204ENST00000397099 KIF20BQ96Q89 1820 aa19.32■□□□□ 0.68
SEC13-204ENST00000397099 IP6K1Q92551 441 aa19.31■□□□□ 0.68
SEC13-204ENST00000397099 FYB1O15117 783 aa19.3■□□□□ 0.68
SEC13-204ENST00000397099 R3HDM1Q15032 1099 aaKnown RBP19.3■□□□□ 0.68
SEC13-204ENST00000397099 CAMKK2Q96RR4 588 aa19.3■□□□□ 0.68
SEC13-204ENST00000397099 RTL1A6NKG5 1358 aa19.3■□□□□ 0.68
SEC13-204ENST00000397099 OVOS2A0A0G2JMS6 1433 aa19.29■□□□□ 0.68
SEC13-204ENST00000397099 HSPA5P11021 654 aaKnown RBP19.29■□□□□ 0.68
SEC13-204ENST00000397099 KIF24Q5T7B8 1368 aa19.29■□□□□ 0.68
SEC13-204ENST00000397099 PARD3Q8TEW0 1356 aa19.29■□□□□ 0.68
SEC13-204ENST00000397099 LRRC37A3O60309 1634 aa19.29■□□□□ 0.68
SEC13-204ENST00000397099 AMPHP49418 695 aa19.27■□□□□ 0.68
SEC13-204ENST00000397099 ANKRD24Q8TF21 1146 aa19.27■□□□□ 0.68
SEC13-204ENST00000397099 CGNL1Q0VF96 1302 aa19.26■□□□□ 0.67
SEC13-204ENST00000397099 EXOC5O00471 708 aa19.26■□□□□ 0.67
SEC13-204ENST00000397099 NLRP2Q9NX02 1062 aa19.26■□□□□ 0.67
SEC13-204ENST00000397099 BCL9O00512 1426 aa19.25■□□□□ 0.67
SEC13-204ENST00000397099 NSD3Q9BZ95 1437 aa19.25■□□□□ 0.67
SEC13-204ENST00000397099 MAP3K19Q56UN5 1328 aa19.25■□□□□ 0.67
SEC13-204ENST00000397099 GGNBP2Q9H3C7 697 aa19.24■□□□□ 0.67
SEC13-204ENST00000397099 PEAK1Q9H792 1746 aa19.24■□□□□ 0.67
SEC13-204ENST00000397099 IL2RBP14784 551 aa19.23■□□□□ 0.67
SEC13-204ENST00000397099 HOXC9P31274 260 aa19.23■□□□□ 0.67
SEC13-204ENST00000397099 NBPF14Q5TI25 921 aa19.23■□□□□ 0.67
SEC13-204ENST00000397099 MARCH10Q8NA82 808 aaPredicted RBP19.23■□□□□ 0.67
SEC13-204ENST00000397099 CARD14Q9BXL6 1004 aa19.23■□□□□ 0.67
SEC13-204ENST00000397099 SMG6Q86US8 1419 aaKnown RBP19.23■□□□□ 0.67
SEC13-204ENST00000397099 LRP5O75197 1615 aa19.22■□□□□ 0.67
SEC13-204ENST00000397099 TNS2Q63HR2 1409 aa19.22■□□□□ 0.67
SEC13-204ENST00000397099 SBF2Q86WG5 1849 aa19.21■□□□□ 0.67
SEC13-204ENST00000397099 POLR3GLQ9BT43 218 aa19.21■□□□□ 0.67
SEC13-204ENST00000397099 RGPD3A6NKT7 1758 aaPredicted RBP19.2■□□□□ 0.66
SEC13-204ENST00000397099 RGPD4Q7Z3J3 1758 aa19.2■□□□□ 0.66
SEC13-204ENST00000397099 BCL11BQ9C0K0 894 aaPredicted RBP19.2■□□□□ 0.66
SEC13-204ENST00000397099 RREB1Q92766 1687 aa19.2■□□□□ 0.66
SEC13-204ENST00000397099 ANKRD26Q9UPS8 1709 aa19.2■□□□□ 0.66
SEC13-204ENST00000397099 FLT4P35916 1363 aa19.19■□□□□ 0.66
SEC13-204ENST00000397099 NSD2O96028 1365 aa19.19■□□□□ 0.66
SEC13-204ENST00000397099 NUP188Q5SRE5 1749 aa19.18■□□□□ 0.66
SEC13-204ENST00000397099 LTV1Q96GA3 475 aaPredicted RBP19.18■□□□□ 0.66
SEC13-204ENST00000397099 INSRP06213 1382 aa19.18■□□□□ 0.66
SEC13-204ENST00000397099 RRS1Q15050 365 aaKnown RBP19.17■□□□□ 0.66
SEC13-204ENST00000397099 PTF1AQ7RTS3 328 aa19.17■□□□□ 0.66
SEC13-204ENST00000397099 PLSCR1O15162 318 aa19.16■□□□□ 0.66
SEC13-204ENST00000397099 MAP2P11137 1827 aaKnown RBP19.16■□□□□ 0.66
SEC13-204ENST00000397099 PANK3Q9H999 370 aa19.15■□□□□ 0.66
SEC13-204ENST00000397099 FBLN1P23142 703 aa19.13■□□□□ 0.65
SEC13-204ENST00000397099 ACSBG1Q96GR2 724 aa19.12■□□□□ 0.65
SEC13-204ENST00000397099 KNSTRNQ9Y448 316 aa19.12■□□□□ 0.65
SEC13-204ENST00000397099 RGPD2P0DJD1 1756 aa19.11■□□□□ 0.65
SEC13-204ENST00000397099 NHSQ6T4R5 1651 aa19.11■□□□□ 0.65
SEC13-204ENST00000397099 WASHC2AQ641Q2 1341 aa19.1■□□□□ 0.65
SEC13-204ENST00000397099 KCNQ2O43526 872 aa19.1■□□□□ 0.65
SEC13-204ENST00000397099 HSP90AB2PQ58FF8 381 aa19.1■□□□□ 0.65
SEC13-204ENST00000397099 RAPGEF4Q8WZA2 1011 aa19.1■□□□□ 0.65
SEC13-204ENST00000397099 KIF7Q2M1P5 1343 aa19.09■□□□□ 0.65
SEC13-204ENST00000397099 NBPF6Q5VWK0 638 aa19.08■□□□□ 0.64
SEC13-204ENST00000397099 ZCRB1Q8TBF4 217 aaKnown RBP19.08■□□□□ 0.64
SEC13-204ENST00000397099 DDX54Q8TDD1 881 aaKnown RBP19.08■□□□□ 0.64
SEC13-204ENST00000397099 NBPF4Q96M43 638 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms