RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SPATA31A7Q8IWB4 1347 aa29.94■■■□□ 2.38
CLN3-207ENST00000395653 CCDC7Q96M83 1385 aa29.94■■■□□ 2.38
CLN3-207ENST00000395653 EVA1CP58658 441 aa29.94■■■□□ 2.38
CLN3-207ENST00000395653 LTN1O94822 1766 aa29.92■■■□□ 2.38
CLN3-207ENST00000395653 AXIN2Q9Y2T1 843 aa29.91■■■□□ 2.38
CLN3-207ENST00000395653 WASHC2AQ641Q2 1341 aa29.91■■■□□ 2.38
CLN3-207ENST00000395653 ONECUT3O60422 494 aaPredicted RBP29.9■■■□□ 2.38
CLN3-207ENST00000395653 ZEB1P37275 1124 aaPredicted RBP29.9■■■□□ 2.38
CLN3-207ENST00000395653 SPATA31A1Q5TZJ5 1347 aa29.9■■■□□ 2.38
CLN3-207ENST00000395653 LARP1Q6PKG0 1096 aaKnown RBP29.89■■■□□ 2.38
CLN3-207ENST00000395653 CRB1P82279 1406 aa29.86■■■□□ 2.37
CLN3-207ENST00000395653 RGPD5Q99666 1765 aa29.85■■■□□ 2.37
CLN3-207ENST00000395653 WDR17Q8IZU2 1322 aa29.85■■■□□ 2.37
CLN3-207ENST00000395653 MAP3K19Q56UN5 1328 aa29.84■■■□□ 2.37
CLN3-207ENST00000395653 FAM98CQ17RN3 349 aaKnown RBP29.84■■■□□ 2.37
CLN3-207ENST00000395653 ANKRD26Q9UPS8 1709 aa29.84■■■□□ 2.37
CLN3-207ENST00000395653 BLMP54132 1417 aaPredicted RBP29.84■■■□□ 2.37
CLN3-207ENST00000395653 NSD2O96028 1365 aa29.83■■■□□ 2.37
CLN3-207ENST00000395653 SEPT12Q8IYM1 358 aa29.83■■■□□ 2.37
CLN3-207ENST00000395653 KNSTRNQ9Y448 316 aa29.82■■■□□ 2.36
CLN3-207ENST00000395653 FBLN1P23142 703 aa29.81■■■□□ 2.36
CLN3-207ENST00000395653 IP6K1Q92551 441 aa29.81■■■□□ 2.36
CLN3-207ENST00000395653 THSD7AQ9UPZ6 1657 aa29.81■■■□□ 2.36
CLN3-207ENST00000395653 RTL1A6NKG5 1358 aa29.81■■■□□ 2.36
CLN3-207ENST00000395653 BARGINQ6ZT62 677 aa29.8■■■□□ 2.36
CLN3-207ENST00000395653 TOM1L2Q6ZVM7 507 aa29.8■■■□□ 2.36
CLN3-207ENST00000395653 TCP11L2Q8N4U5 519 aa29.8■■■□□ 2.36
CLN3-207ENST00000395653 USP35Q9P2H5 1018 aa29.8■■■□□ 2.36
CLN3-207ENST00000395653 THRAP3Q9Y2W1 955 aaKnown RBP29.8■■■□□ 2.36
CLN3-207ENST00000395653 ERBB3P21860 1342 aa29.8■■■□□ 2.36
CLN3-207ENST00000395653 CSB-PGBD3P0DP91 1061 aa29.79■■■□□ 2.36
CLN3-207ENST00000395653 RRS1Q15050 365 aaKnown RBP29.79■■■□□ 2.36
CLN3-207ENST00000395653 AMPHP49418 695 aa29.78■■■□□ 2.36
CLN3-207ENST00000395653 KIF24Q5T7B8 1368 aa29.78■■■□□ 2.36
CLN3-207ENST00000395653 A0A0G2JS52 829 aa29.77■■■□□ 2.36
CLN3-207ENST00000395653 HOXC9P31274 260 aa29.77■■■□□ 2.36
CLN3-207ENST00000395653 MYT1Q01538 1121 aa29.77■■■□□ 2.36
CLN3-207ENST00000395653 BRWD3Q6RI45 1802 aa29.75■■■□□ 2.35
CLN3-207ENST00000395653 PER1O15534 1290 aaPredicted RBP29.75■■■□□ 2.35
CLN3-207ENST00000395653 ANKRD24Q8TF21 1146 aa29.75■■■□□ 2.35
CLN3-207ENST00000395653 CARD10Q9BWT7 1032 aa29.75■■■□□ 2.35
CLN3-207ENST00000395653 AMER1Q5JTC6 1135 aaPredicted RBP29.73■■■□□ 2.35
CLN3-207ENST00000395653 FLT4P35916 1363 aa29.72■■■□□ 2.35
CLN3-207ENST00000395653 FAM208AQ9UK61 1670 aaKnown RBP29.72■■■□□ 2.35
CLN3-207ENST00000395653 PEAK1Q9H792 1746 aa29.71■■■□□ 2.35
CLN3-207ENST00000395653 KRT27Q7Z3Y8 459 aa29.71■■■□□ 2.35
CLN3-207ENST00000395653 EMILIN1Q9Y6C2 1016 aa29.69■■■□□ 2.34
CLN3-207ENST00000395653 PARP4Q9UKK3 1724 aaKnown RBP29.68■■■□□ 2.34
CLN3-207ENST00000395653 WNK3Q9BYP7 1800 aa29.68■■■□□ 2.34
CLN3-207ENST00000395653 MORC1Q86VD1 984 aa29.68■■■□□ 2.34
CLN3-207ENST00000395653 NLRP2Q9NX02 1062 aa29.68■■■□□ 2.34
CLN3-207ENST00000395653 INSRP06213 1382 aa29.68■■■□□ 2.34
CLN3-207ENST00000395653 MAP2P11137 1827 aaKnown RBP29.66■■■□□ 2.34
CLN3-207ENST00000395653 UPF1Q92900 1129 aaKnown RBP eCLIP29.66■■■□□ 2.34
CLN3-207ENST00000395653 LTV1Q96GA3 475 aaPredicted RBP29.66■■■□□ 2.34
CLN3-207ENST00000395653 CDCA7Q9BWT1 371 aaPredicted RBP29.66■■■□□ 2.34
CLN3-207ENST00000395653 POLKQ9UBT6 870 aa29.66■■■□□ 2.34
CLN3-207ENST00000395653 NPC1L1Q9UHC9 1359 aa29.66■■■□□ 2.34
CLN3-207ENST00000395653 DISP2A7MBM2 1401 aa29.65■■■□□ 2.34
CLN3-207ENST00000395653 SMG6Q86US8 1419 aaKnown RBP29.65■■■□□ 2.34
CLN3-207ENST00000395653 TNNT2P45379 298 aaPredicted RBP29.65■■■□□ 2.34
CLN3-207ENST00000395653 HSP90AB2PQ58FF8 381 aa29.65■■■□□ 2.34
CLN3-207ENST00000395653 EP400Q96L91 3159 aa29.63■■■□□ 2.33
CLN3-207ENST00000395653 LRRC37A3O60309 1634 aa29.63■■■□□ 2.33
CLN3-207ENST00000395653 PPM1GO15355 546 aaPredicted RBP29.61■■■□□ 2.33
CLN3-207ENST00000395653 PDE3BQ13370 1112 aa29.6■■■□□ 2.33
CLN3-207ENST00000395653 CC2D1BQ5T0F9 858 aaKnown RBP29.59■■■□□ 2.33
CLN3-207ENST00000395653 DDB1Q16531 1140 aa29.58■■■□□ 2.33
CLN3-207ENST00000395653 IL2RBP14784 551 aa29.56■■■□□ 2.32
CLN3-207ENST00000395653 RGPD2P0DJD1 1756 aa29.56■■■□□ 2.32
CLN3-207ENST00000395653 NBPF6Q5VWK0 638 aa29.54■■■□□ 2.32
CLN3-207ENST00000395653 NBPF4Q96M43 638 aa29.54■■■□□ 2.32
CLN3-207ENST00000395653 CCDC125Q86Z20 511 aa29.54■■■□□ 2.32
CLN3-207ENST00000395653 TNS2Q63HR2 1409 aa29.53■■■□□ 2.32
CLN3-207ENST00000395653 FAM182BQ5T319 152 aa29.53■■■□□ 2.32
CLN3-207ENST00000395653 EXOC5O00471 708 aa29.51■■■□□ 2.31
CLN3-207ENST00000395653 FAM196AQ6ZSG2 479 aa29.51■■■□□ 2.31
CLN3-207ENST00000395653 OVOS2A0A0G2JMS6 1433 aa29.49■■■□□ 2.31
CLN3-207ENST00000395653 NCAPD2Q15021 1401 aa29.48■■■□□ 2.31
CLN3-207ENST00000395653 EIF4A2Q14240 407 aaKnown RBP29.47■■■□□ 2.31
CLN3-207ENST00000395653 USHBP1Q8N6Y0 703 aa29.47■■■□□ 2.31
CLN3-207ENST00000395653 MEGF6O75095 1541 aa29.46■■■□□ 2.31
CLN3-207ENST00000395653 CNGB1Q14028 1251 aaPredicted RBP29.45■■■□□ 2.31
CLN3-207ENST00000395653 MARCH10Q8NA82 808 aaPredicted RBP29.45■■■□□ 2.31
CLN3-207ENST00000395653 MTHFSP49914 203 aa29.44■■■□□ 2.3
CLN3-207ENST00000395653 EYA1Q99502 592 aa29.44■■■□□ 2.3
CLN3-207ENST00000395653 BCL9O00512 1426 aa29.44■■■□□ 2.3
CLN3-207ENST00000395653 RGPD1P0DJD0 1748 aa29.44■■■□□ 2.3
CLN3-207ENST00000395653 RAPGEF4Q8WZA2 1011 aa29.43■■■□□ 2.3
CLN3-207ENST00000395653 DDX10Q13206 875 aaKnown RBP29.41■■■□□ 2.3
CLN3-207ENST00000395653 SF3B2Q13435 895 aaKnown RBP29.41■■■□□ 2.3
CLN3-207ENST00000395653 IGSF1Q8N6C5 1336 aa29.39■■■□□ 2.3
CLN3-207ENST00000395653 TATP17735 454 aaPredicted RBP29.39■■■□□ 2.3
CLN3-207ENST00000395653 TNS1Q9HBL0 1735 aaKnown RBP29.38■■■□□ 2.29
CLN3-207ENST00000395653 ZCRB1Q8TBF4 217 aaKnown RBP29.37■■■□□ 2.29
CLN3-207ENST00000395653 TRIM37O94972 964 aa29.37■■■□□ 2.29
CLN3-207ENST00000395653 SHANK3Q9BYB0 1731 aa29.35■■■□□ 2.29
CLN3-207ENST00000395653 IL13P35225 146 aa29.35■■■□□ 2.29
CLN3-207ENST00000395653 PARD3Q8TEW0 1356 aa29.34■■■□□ 2.29
CLN3-207ENST00000395653 PLEKHG2Q9H7P9 1386 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms