RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 GOLGA6L9A6NEM1 432 aa15.71■□□□□ 0.11
USP49-203ENST00000394253 CCDC27Q2M243 656 aa15.71■□□□□ 0.11
USP49-203ENST00000394253 SUDS3Q9H7L9 328 aaPredicted RBP15.71■□□□□ 0.11
USP49-203ENST00000394253 GOPCQ9HD26 462 aa15.71■□□□□ 0.11
USP49-203ENST00000394253 TRIM22Q8IYM9 498 aa15.71■□□□□ 0.11
USP49-203ENST00000394253 WASHC2AQ641Q2 1341 aa15.71■□□□□ 0.11
USP49-203ENST00000394253 API5Q9BZZ5 524 aaKnown RBP15.71■□□□□ 0.1
USP49-203ENST00000394253 FAM184BQ9ULE4 1060 aa15.71■□□□□ 0.1
USP49-203ENST00000394253 BMP2KQ9NSY1 1161 aaPredicted RBP15.7■□□□□ 0.1
USP49-203ENST00000394253 FBF1Q8TES7 1133 aa15.7■□□□□ 0.1
USP49-203ENST00000394253 CRBNQ96SW2 442 aa15.7■□□□□ 0.1
USP49-203ENST00000394253 FIBPO43427 364 aa15.7■□□□□ 0.1
USP49-203ENST00000394253 SFPQP23246 707 aaKnown RBP eCLIP15.7■□□□□ 0.1
USP49-203ENST00000394253 PRPF40AO75400 957 aaKnown RBP15.7■□□□□ 0.1
USP49-203ENST00000394253 ZSCAN30Q86W11 494 aa15.7■□□□□ 0.1
USP49-203ENST00000394253 NSRP1Q9H0G5 558 aaKnown RBP15.7■□□□□ 0.1
USP49-203ENST00000394253 UACAQ9BZF9 1416 aa15.7■□□□□ 0.1
USP49-203ENST00000394253 TEFQ10587 303 aa15.7■□□□□ 0.1
USP49-203ENST00000394253 BAZ1AQ9NRL2 1556 aaPredicted RBP15.69■□□□□ 0.1
USP49-203ENST00000394253 SMARCC1Q92922 1105 aaPredicted RBP15.69■□□□□ 0.1
USP49-203ENST00000394253 DNAJC21Q5F1R6 531 aaKnown RBP15.69■□□□□ 0.1
USP49-203ENST00000394253 MIPOL1Q8TD10 442 aa15.69■□□□□ 0.1
USP49-203ENST00000394253 PUS7Q96PZ0 661 aaKnown RBP15.69■□□□□ 0.1
USP49-203ENST00000394253 TDO2P48775 406 aa15.69■□□□□ 0.1
USP49-203ENST00000394253 CEP112Q8N8E3 955 aa15.69■□□□□ 0.1
USP49-203ENST00000394253 SPECC1Q5M775 1068 aa15.69■□□□□ 0.1
USP49-203ENST00000394253 MSL1Q68DK7 614 aa15.69■□□□□ 0.1
USP49-203ENST00000394253 CCDC158Q5M9N0 1113 aa15.69■□□□□ 0.1
USP49-203ENST00000394253 CDKL5O76039 1030 aa15.68■□□□□ 0.1
USP49-203ENST00000394253 TNIKQ9UKE5 1360 aa15.68■□□□□ 0.1
USP49-203ENST00000394253 MKRN1Q9UHC7 482 aaKnown RBP15.68■□□□□ 0.1
USP49-203ENST00000394253 ANKRD30AQ9BXX3 1397 aa15.68■□□□□ 0.1
USP49-203ENST00000394253 EIF5P55010 431 aaKnown RBP15.68■□□□□ 0.1
USP49-203ENST00000394253 RAB3IL1Q8TBN0 382 aa15.68■□□□□ 0.1
USP49-203ENST00000394253 TBC1D2BQ9UPU7 963 aa15.67■□□□□ 0.1
USP49-203ENST00000394253 TSNARE1Q96NA8 513 aa15.67■□□□□ 0.1
USP49-203ENST00000394253 IKBKGQ9Y6K9 419 aa15.67■□□□□ 0.1
USP49-203ENST00000394253 UPF3BQ9BZI7 483 aaKnown RBP15.67■□□□□ 0.1
USP49-203ENST00000394253 HOMER2Q9NSB8 354 aa15.67■□□□□ 0.1
USP49-203ENST00000394253 IBSPP21815 317 aaPredicted RBP15.67■□□□□ 0.1
USP49-203ENST00000394253 CBX1P83916 185 aa15.67■□□□□ 0.1
USP49-203ENST00000394253 FERMT1Q9BQL6 677 aa15.66■□□□□ 0.1
USP49-203ENST00000394253 TCHPQ9BT92 498 aa15.66■□□□□ 0.1
USP49-203ENST00000394253 ANAPC4Q9UJX5 808 aa15.66■□□□□ 0.1
USP49-203ENST00000394253 RSRC1Q96IZ7 334 aaKnown RBP15.66■□□□□ 0.1
USP49-203ENST00000394253 FEZ2Q9UHY8 353 aaPredicted RBP15.66■□□□□ 0.1
USP49-203ENST00000394253 PAFAH1B1P43034 410 aa15.65■□□□□ 0.1
USP49-203ENST00000394253 SARNPP82979 210 aaKnown RBP15.65■□□□□ 0.1
USP49-203ENST00000394253 ZNF526Q8TF50 670 aaPredicted RBP15.65■□□□□ 0.1
USP49-203ENST00000394253 WASHC4Q2M389 1173 aa15.65■□□□□ 0.1
USP49-203ENST00000394253 EIF4G1Q04637 1599 aaKnown RBP15.65■□□□□ 0.1
USP49-203ENST00000394253 COG6Q9Y2V7 657 aa15.65■□□□□ 0.1
USP49-203ENST00000394253 PABPN1LA6NDY0 278 aaKnown RBP15.65■□□□□ 0.1
USP49-203ENST00000394253 NGDNQ8NEJ9 315 aaKnown RBP15.65■□□□□ 0.1
USP49-203ENST00000394253 FGFR1OPO95684 399 aaKnown RBP15.64■□□□□ 0.1
USP49-203ENST00000394253 ALS2CR12Q96Q35 445 aa15.64■□□□□ 0.1
USP49-203ENST00000394253 DYNC1I1O14576 645 aa15.64■□□□□ 0.09
USP49-203ENST00000394253 RNF168Q8IYW5 571 aaPredicted RBP15.64■□□□□ 0.09
USP49-203ENST00000394253 PPP1R14CQ8TAE6 165 aa15.64■□□□□ 0.09
USP49-203ENST00000394253 BCL2L13Q9BXK5 485 aa15.64■□□□□ 0.09
USP49-203ENST00000394253 COMMD10Q9Y6G5 202 aa15.64■□□□□ 0.09
USP49-203ENST00000394253 CCDC178Q5BJE1 867 aa15.63■□□□□ 0.09
USP49-203ENST00000394253 CCDC174Q6PII3 467 aa15.63■□□□□ 0.09
USP49-203ENST00000394253 CCDC150Q8NCX0 1101 aa15.63■□□□□ 0.09
USP49-203ENST00000394253 NOL7Q9UMY1 257 aaKnown RBP15.63■□□□□ 0.09
USP49-203ENST00000394253 STMN4Q9H169 189 aaPredicted RBP15.63■□□□□ 0.09
USP49-203ENST00000394253 TACC1O75410 805 aa15.63■□□□□ 0.09
USP49-203ENST00000394253 CFAP100Q494V2 611 aa15.63■□□□□ 0.09
USP49-203ENST00000394253 UBE2Q2Q8WVN8 375 aa15.63■□□□□ 0.09
USP49-203ENST00000394253 GTF2F1P35269 517 aaKnown RBP eCLIP15.63■□□□□ 0.091e-15■■■■■ 71.4
USP49-203ENST00000394253 PRDM10Q9NQV6 1147 aa15.63■□□□□ 0.09
USP49-203ENST00000394253 SH2D4BQ5SQS7 431 aa15.62■□□□□ 0.09
USP49-203ENST00000394253 NEMFO60524 1076 aa15.62■□□□□ 0.09
USP49-203ENST00000394253 KIF5BP33176 963 aa15.62■□□□□ 0.09
USP49-203ENST00000394253 USO1O60763 962 aaKnown RBP15.62■□□□□ 0.09
USP49-203ENST00000394253 LARP1Q6PKG0 1096 aaKnown RBP15.62■□□□□ 0.09
USP49-203ENST00000394253 CWC25Q9NXE8 425 aaPredicted RBP15.62■□□□□ 0.09
USP49-203ENST00000394253 SAMD1Q6SPF0 538 aaPredicted RBP15.62■□□□□ 0.09
USP49-203ENST00000394253 LMAN1P49257 510 aa15.62■□□□□ 0.09
USP49-203ENST00000394253 SMC6Q96SB8 1091 aa15.62■□□□□ 0.09
USP49-203ENST00000394253 CEP131Q9UPN4 1083 aa15.62■□□□□ 0.09
USP49-203ENST00000394253 MATR3P43243 847 aaKnown RBP eCLIP15.61■□□□□ 0.09
USP49-203ENST00000394253 NUP62CLQ9H1M0 184 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 TTC14Q96N46 770 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 STIM2Q9P246 746 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 USH1CQ9Y6N9 552 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 CCDC57Q2TAC2 916 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 NBPF1Q3BBV0 1214 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 SSX2IPQ9Y2D8 614 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 NEK4P51957 841 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 CFAP58Q5T655 872 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 ZHX3Q9H4I2 956 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 FKBP15Q5T1M5 1219 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 CEP120Q8N960 986 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 EHBP1Q8NDI1 1231 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 CEBPZQ03701 1054 aaKnown RBP15.61■□□□□ 0.09
USP49-203ENST00000394253 CEP135Q66GS9 1140 aa15.61■□□□□ 0.09
USP49-203ENST00000394253 A0A1B0GUA9 196 aa15.6■□□□□ 0.09
USP49-203ENST00000394253 SEPT14Q6ZU15 432 aa15.6■□□□□ 0.09
USP49-203ENST00000394253 RAI14Q9P0K7 980 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms