RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 PDILTQ8N807 584 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 SLC4A2P04920 1241 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 TDO2P48775 406 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 MNS1Q8NEH6 495 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 CAGE1Q8TC20 777 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 STK38Q15208 465 aa13.01□□□□□ -0.33
CLIP1-203ENST00000361654 TXLNBQ8N3L3 684 aa13.01□□□□□ -0.33
CLIP1-203ENST00000361654 BTBD11A6QL63 1104 aa13.01□□□□□ -0.33
CLIP1-203ENST00000361654 ZRSR2Q15696 482 aaKnown RBP13.01□□□□□ -0.33
CLIP1-203ENST00000361654 PPP4R3AQ6IN85 833 aa13.01□□□□□ -0.33
CLIP1-203ENST00000361654 ZNHIT6Q9NWK9 470 aaKnown RBP13.01□□□□□ -0.33
CLIP1-203ENST00000361654 ADAMTS2O95450 1211 aa13.01□□□□□ -0.33
CLIP1-203ENST00000361654 MATR3P43243 847 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLIP1-203ENST00000361654 ANKRD1Q15327 319 aa13.01□□□□□ -0.33
CLIP1-203ENST00000361654 ARGLU1Q9NWB6 273 aaPredicted RBP13.01□□□□□ -0.33
CLIP1-203ENST00000361654 SMARCA4P51532 1647 aa13.01□□□□□ -0.33
CLIP1-203ENST00000361654 CDKL5O76039 1030 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 CAVIN4Q5BKX8 364 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 ANKRD18AQ8IVF6 992 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 FGD6Q6ZV73 1430 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 SCLT1Q96NL6 688 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 TEX35Q5T0J7 233 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 SLF2Q8IX21 1173 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 RUSC2Q8N2Y8 1516 aa13□□□□□ -0.33
CLIP1-203ENST00000361654 LRPPRCP42704 1394 aaKnown RBP13□□□□□ -0.33
CLIP1-203ENST00000361654 NUP133Q8WUM0 1156 aa12.99□□□□□ -0.33
CLIP1-203ENST00000361654 ATAD2Q6PL18 1390 aa12.99□□□□□ -0.33
CLIP1-203ENST00000361654 RAPGEF3O95398 923 aa12.99□□□□□ -0.33
CLIP1-203ENST00000361654 DCTN1Q14203 1278 aa12.99□□□□□ -0.33
CLIP1-203ENST00000361654 SPDYE4A6NLX3 237 aa12.99□□□□□ -0.33
CLIP1-203ENST00000361654 HSP90AB3PQ58FF7 597 aa12.99□□□□□ -0.33
CLIP1-203ENST00000361654 RPGRQ92834 1020 aaKnown RBP12.99□□□□□ -0.33
CLIP1-203ENST00000361654 FKBP4Q02790 459 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLIP1-203ENST00000361654 DACH1Q9UI36 760 aa12.99□□□□□ -0.33
CLIP1-203ENST00000361654 XPCQ01831 940 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-203ENST00000361654 HSP90B2PQ58FF3 399 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 IFIT1P09914 478 aaKnown RBP12.98□□□□□ -0.33
CLIP1-203ENST00000361654 SIL1Q9H173 461 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 IFT140Q96RY7 1462 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 IBSPP21815 317 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-203ENST00000361654 ERCC4Q92889 916 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-203ENST00000361654 GCC1Q96CN9 775 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 CCDC7Q96M83 1385 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 ERLIN2O94905 339 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 LETM1O95202 739 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-203ENST00000361654 WDR78Q5VTH9 848 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 BRPF3Q9ULD4 1205 aa12.98□□□□□ -0.33
CLIP1-203ENST00000361654 C22orf23Q9BZE7 217 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 BCL11BQ9C0K0 894 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-203ENST00000361654 MRC2Q9UBG0 1479 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 EXOC5O00471 708 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 ATF7IPQ6VMQ6 1270 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 ANKIB1Q9P2G1 1089 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 AKAP2Q9Y2D5 859 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 FAM13BQ9NYF5 915 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 CYP46A1Q9Y6A2 500 aa12.97□□□□□ -0.33
CLIP1-203ENST00000361654 POLR3DP05423 398 aaPredicted RBP12.96□□□□□ -0.33
CLIP1-203ENST00000361654 POTEJP0CG39 1038 aa12.96□□□□□ -0.33
CLIP1-203ENST00000361654 USP5P45974 858 aa12.96□□□□□ -0.33
CLIP1-203ENST00000361654 WASF1Q92558 559 aa12.96□□□□□ -0.33
CLIP1-203ENST00000361654 LRRCC1Q9C099 1032 aa12.96□□□□□ -0.33
CLIP1-203ENST00000361654 SSBP05455 408 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLIP1-203ENST00000361654 EXOSC9Q06265 439 aaKnown RBP12.96□□□□□ -0.33
CLIP1-203ENST00000361654 CCDC61Q9Y6R9 512 aa12.96□□□□□ -0.34
CLIP1-203ENST00000361654 TOM1O60784 492 aa12.96□□□□□ -0.34
CLIP1-203ENST00000361654 STK11IPQ8N1F8 1099 aa12.96□□□□□ -0.34
CLIP1-203ENST00000361654 TANGO6Q9C0B7 1094 aa12.96□□□□□ -0.34
CLIP1-203ENST00000361654 ANKRD30BQ9BXX2 1392 aa12.96□□□□□ -0.34
CLIP1-203ENST00000361654 CCP110O43303 1012 aa12.95□□□□□ -0.34
CLIP1-203ENST00000361654 NEFHP12036 1026 aa12.95□□□□□ -0.34
CLIP1-203ENST00000361654 DHX8Q14562 1220 aaKnown RBP12.95□□□□□ -0.34
CLIP1-203ENST00000361654 ABCF2Q9UG63 623 aa12.95□□□□□ -0.34
CLIP1-203ENST00000361654 METTL24Q5JXM2 366 aa12.95□□□□□ -0.34
CLIP1-203ENST00000361654 AIDAQ96BJ3 306 aa12.95□□□□□ -0.34
CLIP1-203ENST00000361654 IFT57Q9NWB7 429 aa12.95□□□□□ -0.34
CLIP1-203ENST00000361654 AMOTQ4VCS5 1084 aa12.95□□□□□ -0.34
CLIP1-203ENST00000361654 CT47B1P0C2W7 299 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-203ENST00000361654 PPM1FP49593 454 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-203ENST00000361654 PANK1Q8TE04 598 aa12.94□□□□□ -0.34
CLIP1-203ENST00000361654 CCDC97Q96F63 343 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-203ENST00000361654 EHMT1Q9H9B1 1298 aa12.94□□□□□ -0.34
CLIP1-203ENST00000361654 SEC63Q9UGP8 760 aaKnown RBP12.94□□□□□ -0.34
CLIP1-203ENST00000361654 PPP6R1Q9UPN7 881 aa12.94□□□□□ -0.34
CLIP1-203ENST00000361654 IDH1O75874 414 aaKnown RBP12.94□□□□□ -0.34
CLIP1-203ENST00000361654 MYCNP04198 464 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-203ENST00000361654 CHMP4BP1P59074 171 aa12.94□□□□□ -0.34
CLIP1-203ENST00000361654 DZIP1Q86YF9 867 aaKnown RBP12.94□□□□□ -0.34
CLIP1-203ENST00000361654 GNAT3A8MTJ3 354 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 PPP1R12BO60237 982 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-203ENST00000361654 NEK4P51957 841 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 AACSQ86V21 672 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 BRPF1P55201 1214 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-203ENST00000361654 MPHOSPH6Q99547 160 aaKnown RBP12.93□□□□□ -0.34
CLIP1-203ENST00000361654 MKNK2Q9HBH9 465 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 BRD4O60885 1362 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-203ENST00000361654 PTCD1O75127 700 aaKnown RBP12.93□□□□□ -0.34
CLIP1-203ENST00000361654 KRT32Q14532 448 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 AEBP1Q8IUX7 1158 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 CUL5Q93034 780 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 NUDT16Q96DE0 195 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms