RNA–Protein interactions for RNA: ENST00000352993.7

BRCA1-201, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 3,668 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-201ENST00000352993 ZBTB40Q9NUA8 1239 aa9.35□□□□□ -0.91
BRCA1-201ENST00000352993 CROCC2H7BZ55 1655 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 ZSCAN20P17040 1043 aaPredicted RBP9.34□□□□□ -0.91
BRCA1-201ENST00000352993 TSPY26PQ9H489 355 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 EIF2AK4Q9P2K8 1649 aaKnown RBP9.34□□□□□ -0.91
BRCA1-201ENST00000352993 ELL2O00472 640 aaPredicted RBP9.34□□□□□ -0.91
BRCA1-201ENST00000352993 MYRIPQ8NFW9 859 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 KIF3AQ9Y496 699 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 POLR3AO14802 1390 aaPredicted RBP9.34□□□□□ -0.91
BRCA1-201ENST00000352993 CCDC141Q6ZP82 1450 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 MYO3AQ8NEV4 1616 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 HMGN5P82970 282 aaKnown RBP9.34□□□□□ -0.91
BRCA1-201ENST00000352993 NPC1L1Q9UHC9 1359 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 SAMD9LQ8IVG5 1584 aa9.34□□□□□ -0.91
BRCA1-201ENST00000352993 KDM5AP29375 1690 aaKnown RBP9.34□□□□□ -0.91
BRCA1-201ENST00000352993 CDK11BP21127 795 aaKnown RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 CHAF1AQ13111 956 aaPredicted RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 UTP14CQ5TAP6 766 aaKnown RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 TTC12Q9H892 705 aaPredicted RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 ATP10AO60312 1499 aa9.33□□□□□ -0.92
BRCA1-201ENST00000352993 SCAF11Q99590 1463 aaKnown RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 NSFL1CQ9UNZ2 370 aaKnown RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 ZC3H13Q5T200 1668 aaKnown RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 PDCL2Q8N4E4 241 aa9.33□□□□□ -0.92
BRCA1-201ENST00000352993 SENP3Q9H4L4 574 aaPredicted RBP9.33□□□□□ -0.92
BRCA1-201ENST00000352993 TRAK1Q9UPV9 953 aa9.33□□□□□ -0.92
BRCA1-201ENST00000352993 NOLC1Q14978 699 aaKnown RBP eCLIP9.32□□□□□ -0.92
BRCA1-201ENST00000352993 CASC1Q6TDU7 716 aa9.32□□□□□ -0.92
BRCA1-201ENST00000352993 SYAP1Q96A49 352 aaPredicted RBP9.32□□□□□ -0.92
BRCA1-201ENST00000352993 BCL11BQ9C0K0 894 aaPredicted RBP9.32□□□□□ -0.92
BRCA1-201ENST00000352993 NSD3Q9BZ95 1437 aa9.32□□□□□ -0.92
BRCA1-201ENST00000352993 SHANK2Q9UPX8 1470 aa9.32□□□□□ -0.92
BRCA1-201ENST00000352993 RSPH4AQ5TD94 716 aa9.32□□□□□ -0.92
BRCA1-201ENST00000352993 USP25Q9UHP3 1055 aa9.32□□□□□ -0.92
BRCA1-201ENST00000352993 RNF17Q9BXT8 1623 aaKnown RBP9.32□□□□□ -0.92
BRCA1-201ENST00000352993 ZNF518AQ6AHZ1 1483 aa9.32□□□□□ -0.92
BRCA1-201ENST00000352993 GCC1Q96CN9 775 aa9.32□□□□□ -0.92
BRCA1-201ENST00000352993 GTPBP4Q9BZE4 634 aaKnown RBP9.32□□□□□ -0.92
BRCA1-201ENST00000352993 CWC22Q9HCG8 908 aaKnown RBP9.32□□□□□ -0.92
BRCA1-201ENST00000352993 CGNQ9P2M7 1197 aaKnown RBP9.32□□□□□ -0.92
BRCA1-201ENST00000352993 SYNMO15061 1565 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 MAST1Q9Y2H9 1570 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 SLC24A1O60721 1099 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 MBD3O95983 291 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 ATP2B3Q16720 1220 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 GDPD2Q9HCC8 539 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 SCAPERQ9BY12 1400 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 MAPK8IP2Q13387 824 aaPredicted RBP9.31□□□□□ -0.92
BRCA1-201ENST00000352993 PRIMPOLQ96LW4 560 aa9.31□□□□□ -0.92
BRCA1-201ENST00000352993 CT47B1P0C2W7 299 aaPredicted RBP9.3□□□□□ -0.92
BRCA1-201ENST00000352993 CCDC27Q2M243 656 aa9.3□□□□□ -0.92
BRCA1-201ENST00000352993 CLEC17AQ6ZS10 378 aa9.3□□□□□ -0.92
BRCA1-201ENST00000352993 PTPRTO14522 1441 aa9.3□□□□□ -0.92
BRCA1-201ENST00000352993 LETM1O95202 739 aaPredicted RBP9.3□□□□□ -0.92
BRCA1-201ENST00000352993 TMPOP42166 694 aaKnown RBP9.3□□□□□ -0.92
BRCA1-201ENST00000352993 DEPDC5O75140 1603 aa9.3□□□□□ -0.92
BRCA1-201ENST00000352993 KIF20AO95235 890 aa9.29□□□□□ -0.92
BRCA1-201ENST00000352993 U2AF2P26368 475 aaKnown RBP eCLIP9.29□□□□□ -0.921e-6■■■□□ 19.1
BRCA1-201ENST00000352993 CHMP4BQ9H444 224 aaKnown RBP9.29□□□□□ -0.92
BRCA1-201ENST00000352993 NEK4P51957 841 aa9.29□□□□□ -0.92
BRCA1-201ENST00000352993 INTS3Q68E01 1043 aaKnown RBP9.29□□□□□ -0.92
BRCA1-201ENST00000352993 ZNF710Q8N1W2 664 aa9.29□□□□□ -0.92
BRCA1-201ENST00000352993 VGLL3A8MV65 326 aa9.29□□□□□ -0.92
BRCA1-201ENST00000352993 PHF14O94880 888 aa9.29□□□□□ -0.92
BRCA1-201ENST00000352993 BCL2L12Q9HB09 334 aa9.29□□□□□ -0.92
BRCA1-201ENST00000352993 NPATQ14207 1427 aa9.28□□□□□ -0.92
BRCA1-201ENST00000352993 PHF23Q9BUL5 403 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-201ENST00000352993 LAMC1P11047 1609 aa9.28□□□□□ -0.92
BRCA1-201ENST00000352993 ADCY5O95622 1261 aa9.28□□□□□ -0.92
BRCA1-201ENST00000352993 SAFB2Q14151 953 aaKnown RBP eCLIP9.28□□□□□ -0.921e-6■□□□□ 10.7
BRCA1-201ENST00000352993 C16orf71Q8IYS4 520 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-201ENST00000352993 SPC24Q8NBT2 197 aa9.28□□□□□ -0.92
BRCA1-201ENST00000352993 PIBF1Q8WXW3 757 aa9.28□□□□□ -0.92
BRCA1-201ENST00000352993 DIAPH3Q9NSV4 1193 aa9.27□□□□□ -0.92
BRCA1-201ENST00000352993 USP26Q9BXU7 913 aa9.27□□□□□ -0.93
BRCA1-201ENST00000352993 CFAP44Q96MT7 982 aa9.27□□□□□ -0.93
BRCA1-201ENST00000352993 ZDHHC9Q9Y397 364 aa9.27□□□□□ -0.93
BRCA1-201ENST00000352993 YEATS2Q9ULM3 1422 aa9.27□□□□□ -0.93
BRCA1-201ENST00000352993 ARHGEF5Q12774 1597 aa9.27□□□□□ -0.93
BRCA1-201ENST00000352993 GSPT1P15170 499 aaKnown RBP9.26□□□□□ -0.93
BRCA1-201ENST00000352993 REC8O95072 547 aa9.26□□□□□ -0.93
BRCA1-201ENST00000352993 CYP2E1P05181 493 aaPredicted RBP9.26□□□□□ -0.93
BRCA1-201ENST00000352993 HCLS1P14317 486 aaPredicted RBP9.26□□□□□ -0.93
BRCA1-201ENST00000352993 ZBTB7BO15156 539 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 SMARCA5O60264 1052 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 GTF2E1P29083 439 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 GGNBP2Q9H3C7 697 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 TRIM35Q9UPQ4 493 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 CLTCQ00610 1675 aaKnown RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 ADGRF5Q8IZF2 1346 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 RIOK3O14730 519 aaKnown RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 TMEM132EQ6IEE7 984 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 ILDR1Q86SU0 546 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 PLEKHM2Q8IWE5 1019 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 STAC3Q96MF2 364 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 NAP1L2Q9ULW6 460 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 PPIP5K1Q6PFW1 1433 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 ZBTB22O15209 634 aa9.25□□□□□ -0.93
BRCA1-201ENST00000352993 GADD45BO75293 160 aaPredicted RBP9.25□□□□□ -0.93
BRCA1-201ENST00000352993 DRC7Q8IY82 874 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms