RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 AATKQ6ZMQ8 1374 aa20.01■□□□□ 0.79
HMGA1-202ENST00000347617 WWC1Q8IX03 1113 aa20■□□□□ 0.79
HMGA1-202ENST00000347617 IQSEC2Q5JU85 1478 aa19.99■□□□□ 0.79
HMGA1-202ENST00000347617 PANK1Q8TE04 598 aa19.98■□□□□ 0.79
HMGA1-202ENST00000347617 RUNDC1Q96C34 613 aa19.98■□□□□ 0.79
HMGA1-202ENST00000347617 PDZRN3Q9UPQ7 1066 aa19.98■□□□□ 0.79
HMGA1-202ENST00000347617 RARSP54136 660 aaKnown RBP19.98■□□□□ 0.79
HMGA1-202ENST00000347617 CCDC27Q2M243 656 aa19.98■□□□□ 0.79
HMGA1-202ENST00000347617 ACEP12821 1306 aa19.98■□□□□ 0.79
HMGA1-202ENST00000347617 CT47B1P0C2W7 299 aaPredicted RBP19.97■□□□□ 0.79
HMGA1-202ENST00000347617 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.97■□□□□ 0.79
HMGA1-202ENST00000347617 COL3A1P02461 1466 aaPredicted RBP19.97■□□□□ 0.79
HMGA1-202ENST00000347617 SSH2Q76I76 1423 aa19.96■□□□□ 0.79
HMGA1-202ENST00000347617 HSP90AA1P07900 732 aaKnown RBP19.96■□□□□ 0.79
HMGA1-202ENST00000347617 PHF23Q9BUL5 403 aaPredicted RBP19.96■□□□□ 0.79
HMGA1-202ENST00000347617 USP6P35125 1406 aa19.96■□□□□ 0.79
HMGA1-202ENST00000347617 TTC21AQ8NDW8 1320 aa19.96■□□□□ 0.79
HMGA1-202ENST00000347617 NCKAP5LQ9HCH0 1330 aa19.96■□□□□ 0.79
HMGA1-202ENST00000347617 TRAK2O60296 914 aa19.95■□□□□ 0.78
HMGA1-202ENST00000347617 COG3Q96JB2 828 aa19.95■□□□□ 0.78
HMGA1-202ENST00000347617 TTC21BQ7Z4L5 1316 aa19.95■□□□□ 0.78
HMGA1-202ENST00000347617 NAP1L5Q96NT1 182 aaPredicted RBP19.95■□□□□ 0.78
HMGA1-202ENST00000347617 NRKQ7Z2Y5 1582 aa19.95■□□□□ 0.78
HMGA1-202ENST00000347617 NCOA3Q9Y6Q9 1424 aa19.94■□□□□ 0.78
HMGA1-202ENST00000347617 POLKQ9UBT6 870 aa19.94■□□□□ 0.78
HMGA1-202ENST00000347617 CIZ1Q9ULV3 898 aaPredicted RBP19.94■□□□□ 0.78
HMGA1-202ENST00000347617 FMN2Q9NZ56 1722 aa19.93■□□□□ 0.78
HMGA1-202ENST00000347617 SKOR2Q2VWA4 1001 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-202ENST00000347617 NME9Q86XW9 330 aa19.93■□□□□ 0.78
HMGA1-202ENST00000347617 C22orf23Q9BZE7 217 aa19.93■□□□□ 0.78
HMGA1-202ENST00000347617 NWD1Q149M9 1564 aa19.92■□□□□ 0.78
HMGA1-202ENST00000347617 DIAPH1O60610 1272 aaKnown RBP19.92■□□□□ 0.78
HMGA1-202ENST00000347617 MYH16Q9H6N6 1097 aa19.92■□□□□ 0.78
HMGA1-202ENST00000347617 PCDHB15Q9Y5E8 787 aa19.92■□□□□ 0.78
HMGA1-202ENST00000347617 HSCBQ8IWL3 235 aa19.91■□□□□ 0.78
HMGA1-202ENST00000347617 HSP90AA2PQ14568 343 aaPredicted RBP19.9■□□□□ 0.78
HMGA1-202ENST00000347617 DMRT2Q9Y5R5 561 aa19.9■□□□□ 0.78
HMGA1-202ENST00000347617 ADGRL3Q9HAR2 1447 aa19.9■□□□□ 0.78
HMGA1-202ENST00000347617 U2AF1L5P0DN76 240 aaPredicted RBP19.9■□□□□ 0.78
HMGA1-202ENST00000347617 U2AF1Q01081 240 aaKnown RBP eCLIP19.9■□□□□ 0.78
HMGA1-202ENST00000347617 GRPEL1Q9HAV7 217 aa19.9■□□□□ 0.78
HMGA1-202ENST00000347617 MVPQ14764 893 aaKnown RBP19.89■□□□□ 0.77
HMGA1-202ENST00000347617 SNX21Q969T3 373 aa19.89■□□□□ 0.77
HMGA1-202ENST00000347617 USP31Q70CQ4 1352 aa19.89■□□□□ 0.77
HMGA1-202ENST00000347617 CDK12Q9NYV4 1490 aaPredicted RBP19.89■□□□□ 0.77
HMGA1-202ENST00000347617 OVOS2A0A0J9YW53 1432 aa19.89■□□□□ 0.77
HMGA1-202ENST00000347617 OVOS2Q6IE36 1432 aa19.89■□□□□ 0.77
HMGA1-202ENST00000347617 TPM2P07951 284 aa19.88■□□□□ 0.77
HMGA1-202ENST00000347617 HDAC1Q13547 482 aaPredicted RBP19.88■□□□□ 0.77
HMGA1-202ENST00000347617 MAP2P11137 1827 aaKnown RBP19.88■□□□□ 0.77
HMGA1-202ENST00000347617 TCP11L2Q8N4U5 519 aa19.88■□□□□ 0.77
HMGA1-202ENST00000347617 FCHSD2O94868 740 aa19.87■□□□□ 0.77
HMGA1-202ENST00000347617 NGDNQ8NEJ9 315 aaKnown RBP19.87■□□□□ 0.77
HMGA1-202ENST00000347617 ESPNB1AK53 854 aa19.86■□□□□ 0.77
HMGA1-202ENST00000347617 ZKSCAN2Q63HK3 967 aa19.86■□□□□ 0.77
HMGA1-202ENST00000347617 GBP4Q96PP9 640 aa19.86■□□□□ 0.77
HMGA1-202ENST00000347617 PLEKHF1Q96S99 279 aa19.86■□□□□ 0.77
HMGA1-202ENST00000347617 NALCNQ8IZF0 1738 aa19.86■□□□□ 0.77
HMGA1-202ENST00000347617 NUTM2FA1L443 756 aa19.85■□□□□ 0.77
HMGA1-202ENST00000347617 PKNOX2Q96KN3 472 aa19.85■□□□□ 0.77
HMGA1-202ENST00000347617 RGPD8O14715 1765 aaPredicted RBP19.84■□□□□ 0.77
HMGA1-202ENST00000347617 DDIT3P35638 169 aa19.84■□□□□ 0.77
HMGA1-202ENST00000347617 RBM25P49756 843 aaKnown RBP19.83■□□□□ 0.77
HMGA1-202ENST00000347617 TRIM44Q96DX7 344 aaPredicted RBP19.83■□□□□ 0.77
HMGA1-202ENST00000347617 ZRANB1Q9UGI0 708 aa19.83■□□□□ 0.77
HMGA1-202ENST00000347617 RLBP1P12271 317 aa19.83■□□□□ 0.76
HMGA1-202ENST00000347617 SMC5Q8IY18 1101 aa19.83■□□□□ 0.76
HMGA1-202ENST00000347617 PANK2Q9BZ23 570 aa19.83■□□□□ 0.76
HMGA1-202ENST00000347617 LRRC7Q96NW7 1537 aa19.82■□□□□ 0.76
HMGA1-202ENST00000347617 U2SURPO15042 1029 aaKnown RBP19.82■□□□□ 0.76
HMGA1-202ENST00000347617 IL13P35225 146 aa19.82■□□□□ 0.76
HMGA1-202ENST00000347617 DZIP1LQ8IYY4 767 aaKnown RBP19.82■□□□□ 0.76
HMGA1-202ENST00000347617 DDX19BQ9UMR2 479 aa19.81■□□□□ 0.76
HMGA1-202ENST00000347617 USP54Q70EL1 1684 aa19.8■□□□□ 0.76
HMGA1-202ENST00000347617 GZF1Q9H116 711 aaPredicted RBP19.8■□□□□ 0.76
HMGA1-202ENST00000347617 PHF8Q9UPP1 1060 aa19.8■□□□□ 0.76
HMGA1-202ENST00000347617 FTSJ3Q8IY81 847 aaKnown RBP19.8■□□□□ 0.76
HMGA1-202ENST00000347617 EMILIN1Q9Y6C2 1016 aa19.8■□□□□ 0.76
HMGA1-202ENST00000347617 KIF16BQ96L93 1317 aa19.8■□□□□ 0.76
HMGA1-202ENST00000347617 IBTKQ9P2D0 1353 aaPredicted RBP19.8■□□□□ 0.76
HMGA1-202ENST00000347617 MFAP1P55081 439 aaKnown RBP19.79■□□□□ 0.76
HMGA1-202ENST00000347617 KIF24Q5T7B8 1368 aa19.78■□□□□ 0.76
HMGA1-202ENST00000347617 TMPOP42166 694 aaKnown RBP19.78■□□□□ 0.76
HMGA1-202ENST00000347617 PROSER2Q86WR7 435 aaPredicted RBP19.78■□□□□ 0.76
HMGA1-202ENST00000347617 KDM4FA0A1W2PPD8 638 aa19.77■□□□□ 0.76
HMGA1-202ENST00000347617 TERF1P54274 439 aa19.77■□□□□ 0.76
HMGA1-202ENST00000347617 CCDC173Q0VFZ6 552 aa19.77■□□□□ 0.76
HMGA1-202ENST00000347617 C19orf44Q9H6X5 657 aa19.77■□□□□ 0.76
HMGA1-202ENST00000347617 IL16Q14005 1332 aa19.76■□□□□ 0.75
HMGA1-202ENST00000347617 FBLN1P23142 703 aa19.76■□□□□ 0.75
HMGA1-202ENST00000347617 AEBP2Q6ZN18 517 aaPredicted RBP19.76■□□□□ 0.75
HMGA1-202ENST00000347617 RAB3GAP1Q15042 981 aa19.75■□□□□ 0.75
HMGA1-202ENST00000347617 DCCP43146 1447 aa19.74■□□□□ 0.75
HMGA1-202ENST00000347617 RRS1Q15050 365 aaKnown RBP19.74■□□□□ 0.75
HMGA1-202ENST00000347617 PIK3C2AO00443 1686 aa19.74■□□□□ 0.75
HMGA1-202ENST00000347617 GOLGA6L22H0YM25 854 aa19.73■□□□□ 0.75
HMGA1-202ENST00000347617 CLEC17AQ6ZS10 378 aa19.73■□□□□ 0.75
HMGA1-202ENST00000347617 SPRYD3Q8NCJ5 442 aa19.73■□□□□ 0.75
HMGA1-202ENST00000347617 PPP1R9BQ96SB3 815 aa19.73■□□□□ 0.75
HMGA1-202ENST00000347617 C14orf37Q86TY3 774 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms