RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CASQ1P31415 396 aa15.11■□□□□ 0.01
USP47-202ENST00000339865 BBXQ8WY36 941 aaPredicted RBP15.11■□□□□ 0.01
USP47-202ENST00000339865 RFX1P22670 979 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 GTF2F1P35269 517 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP47-202ENST00000339865 SPECC1Q5M775 1068 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 JMYQ8N9B5 988 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 RAI14Q9P0K7 980 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 ESPNB1AK53 854 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 FEZ1Q99689 392 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 LUZP1Q86V48 1076 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 GBP3Q9H0R5 595 aa15.1■□□□□ 0.01
USP47-202ENST00000339865 TIGD1Q96MW7 591 aa15.09■□□□□ 0.01
USP47-202ENST00000339865 DNAAF4Q8WXU2 420 aa15.09■□□□□ 0.01
USP47-202ENST00000339865 GCOM1H8Y6P7 765 aaPredicted RBP15.09■□□□□ 0.01
USP47-202ENST00000339865 MYZAPP0CAP1 466 aa15.09■□□□□ 0.01
USP47-202ENST00000339865 ZMYND15Q9H091 742 aa15.09■□□□□ 0.01
USP47-202ENST00000339865 ECM2O94769 699 aaPredicted RBP15.09■□□□□ 0.01
USP47-202ENST00000339865 SEPT6Q14141 434 aa15.09■□□□□ 0.01
USP47-202ENST00000339865 ZNF397Q8NF99 534 aaPredicted RBP15.09■□□□□ 0.01
USP47-202ENST00000339865 MYBBP1AQ9BQG0 1328 aaKnown RBP15.09■□□□□ 0.01
USP47-202ENST00000339865 STK3Q13188 491 aa15.08■□□□□ 0.01
USP47-202ENST00000339865 ANKRD18BA2A2Z9 1011 aa15.08■□□□□ 0
USP47-202ENST00000339865 EIF5P55010 431 aaKnown RBP15.08■□□□□ 0
USP47-202ENST00000339865 PTPN14Q15678 1187 aa15.08■□□□□ 0
USP47-202ENST00000339865 CCDC178Q5BJE1 867 aa15.07■□□□□ 0
USP47-202ENST00000339865 ZBED9Q6R2W3 1325 aa15.07■□□□□ 0
USP47-202ENST00000339865 NAP1L3Q99457 506 aaPredicted RBP15.07■□□□□ 0
USP47-202ENST00000339865 CDC45O75419 566 aa15.06■□□□□ 0
USP47-202ENST00000339865 IMMTQ16891 758 aaKnown RBP15.06■□□□□ 0
USP47-202ENST00000339865 DNA2P51530 1060 aa15.06■□□□□ 0
USP47-202ENST00000339865 GON4LQ3T8J9 2241 aa15.06■□□□□ 0
USP47-202ENST00000339865 MCM2P49736 904 aa15.06■□□□□ 0
USP47-202ENST00000339865 CTNNBL1Q8WYA6 563 aaPredicted RBP15.06■□□□□ 0
USP47-202ENST00000339865 MCM3P25205 808 aa15.06■□□□□ 0
USP47-202ENST00000339865 HOOK3Q86VS8 718 aa15.06■□□□□ 0
USP47-202ENST00000339865 KIF18AQ8NI77 898 aa15.06■□□□□ 0
USP47-202ENST00000339865 FSD1Q9BTV5 496 aa15.06■□□□□ 0
USP47-202ENST00000339865 CFAP100Q494V2 611 aa15.06■□□□□ 0
USP47-202ENST00000339865 COMMD10Q9Y6G5 202 aa15.05■□□□□ -0
USP47-202ENST00000339865 SSBP05455 408 aaKnown RBP eCLIP15.05■□□□□ -0
USP47-202ENST00000339865 CETN2P41208 172 aa15.05■□□□□ -0
USP47-202ENST00000339865 WDHD1O75717 1129 aaPredicted RBP15.05■□□□□ -0
USP47-202ENST00000339865 IRX3P78415 501 aaPredicted RBP15.05■□□□□ -0
USP47-202ENST00000339865 AIMP1Q12904 312 aaKnown RBP15.05■□□□□ -0
USP47-202ENST00000339865 RIC3Q7Z5B4 369 aa15.05■□□□□ -0
USP47-202ENST00000339865 C6orf163Q5TEZ5 329 aa15.05■□□□□ -0
USP47-202ENST00000339865 CTR9Q6PD62 1173 aa15.05■□□□□ -0
USP47-202ENST00000339865 SLC3A2P08195 630 aaKnown RBP15.04■□□□□ -0
USP47-202ENST00000339865 APAF1O14727 1248 aa15.04■□□□□ -0
USP47-202ENST00000339865 FBF1Q8TES7 1133 aa15.04■□□□□ -0
USP47-202ENST00000339865 PANK3Q9H999 370 aa15.04■□□□□ -0
USP47-202ENST00000339865 MACROD2A1Z1Q3 448 aa15.04■□□□□ -0
USP47-202ENST00000339865 URI1O94763 535 aaPredicted RBP15.04■□□□□ -0
USP47-202ENST00000339865 LMAN1P49257 510 aa15.04■□□□□ -0
USP47-202ENST00000339865 KRT85P78386 507 aa15.04■□□□□ -0
USP47-202ENST00000339865 DRC1Q96MC2 740 aa15.04■□□□□ -0
USP47-202ENST00000339865 UPF3BQ9BZI7 483 aaKnown RBP15.04■□□□□ -0
USP47-202ENST00000339865 KIF5CO60282 957 aa15.03■□□□□ -0
USP47-202ENST00000339865 APBB1IPQ7Z5R6 666 aaPredicted RBP15.03■□□□□ -0
USP47-202ENST00000339865 TMX1Q9H3N1 280 aa15.03■□□□□ -0
USP47-202ENST00000339865 HLTFQ14527 1009 aaKnown RBP eCLIP15.03■□□□□ -09e-7■■■□□ 18.1
USP47-202ENST00000339865 HOMER2Q9NSB8 354 aa15.03■□□□□ -0
USP47-202ENST00000339865 EIF4G1Q04637 1599 aaKnown RBP15.03■□□□□ -0
USP47-202ENST00000339865 SPECC1LQ69YQ0 1117 aa15.03■□□□□ -0
USP47-202ENST00000339865 RIPK4P57078 832 aa15.02■□□□□ -0
USP47-202ENST00000339865 GIGYF2Q6Y7W6 1299 aaKnown RBP15.02■□□□□ -0
USP47-202ENST00000339865 API5Q9BZZ5 524 aaKnown RBP15.02■□□□□ -0
USP47-202ENST00000339865 PPP4R3BQ5MIZ7 849 aa15.02■□□□□ -0
USP47-202ENST00000339865 TRAK1Q9UPV9 953 aa15.02■□□□□ -0
USP47-202ENST00000339865 SPA17Q15506 151 aa15.02■□□□□ -0
USP47-202ENST00000339865 CCDC6Q16204 474 aa15.02■□□□□ -0
USP47-202ENST00000339865 COG3Q96JB2 828 aa15.02■□□□□ -0
USP47-202ENST00000339865 TBC1D2BQ9UPU7 963 aa15.02■□□□□ -0
USP47-202ENST00000339865 KIF4BQ2VIQ3 1234 aa15.02□□□□□ -0.01
USP47-202ENST00000339865 ATP2C2O75185 946 aa15.02□□□□□ -0.01
USP47-202ENST00000339865 ERC1Q8IUD2 1116 aa15.02□□□□□ -0.01
USP47-202ENST00000339865 MPHOSPH9Q99550 1183 aa15.01□□□□□ -0.01
USP47-202ENST00000339865 SMARCC1Q92922 1105 aaPredicted RBP15.01□□□□□ -0.01
USP47-202ENST00000339865 POTEJP0CG39 1038 aa15.01□□□□□ -0.01
USP47-202ENST00000339865 ARHGAP35Q9NRY4 1499 aa15.01□□□□□ -0.01
USP47-202ENST00000339865 FERP16591 822 aa15.01□□□□□ -0.01
USP47-202ENST00000339865 PANK1Q8TE04 598 aa15.01□□□□□ -0.01
USP47-202ENST00000339865 TRIM21P19474 475 aaKnown RBP15□□□□□ -0.01
USP47-202ENST00000339865 TRIM22Q8IYM9 498 aa15□□□□□ -0.01
USP47-202ENST00000339865 LARP1Q6PKG0 1096 aaKnown RBP15□□□□□ -0.01
USP47-202ENST00000339865 CEP57L1Q8IYX8 460 aa15□□□□□ -0.01
USP47-202ENST00000339865 SMTNL1A8MU46 457 aa15□□□□□ -0.01
USP47-202ENST00000339865 UBTFL1P0CB47 393 aaPredicted RBP15□□□□□ -0.01
USP47-202ENST00000339865 KIF3CO14782 793 aa15□□□□□ -0.01
USP47-202ENST00000339865 LARP1BQ659C4 914 aaKnown RBP15□□□□□ -0.01
USP47-202ENST00000339865 BMP2KQ9NSY1 1161 aaPredicted RBP15□□□□□ -0.01
USP47-202ENST00000339865 CFAP58Q5T655 872 aa14.99□□□□□ -0.01
USP47-202ENST00000339865 WDR33Q9C0J8 1336 aaKnown RBP14.99□□□□□ -0.01
USP47-202ENST00000339865 NUP155O75694 1391 aa14.99□□□□□ -0.01
USP47-202ENST00000339865 NUP62CLQ9H1M0 184 aa14.99□□□□□ -0.01
USP47-202ENST00000339865 PSME1Q06323 249 aa14.99□□□□□ -0.01
USP47-202ENST00000339865 SPATA32Q96LK8 384 aa14.99□□□□□ -0.01
USP47-202ENST00000339865 HSPA4P34932 840 aa14.99□□□□□ -0.01
USP47-202ENST00000339865 FSD2A1L4K1 749 aa14.98□□□□□ -0.01
USP47-202ENST00000339865 TSPYL4Q9UJ04 414 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms