RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 LARP1Q6PKG0 1096 aaKnown RBP8.44□□□□□ -1.06
SF3B1-201ENST00000335508 CPLX2Q6PUV4 134 aaKnown RBP8.44□□□□□ -1.06
SF3B1-201ENST00000335508 TSR2Q969E8 191 aaKnown RBP8.44□□□□□ -1.06
SF3B1-201ENST00000335508 ANO8Q9HCE9 1232 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-201ENST00000335508 DDX54Q8TDD1 881 aaKnown RBP8.44□□□□□ -1.06
SF3B1-201ENST00000335508 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-201ENST00000335508 IP6K1Q92551 441 aa8.44□□□□□ -1.06
SF3B1-201ENST00000335508 A0A1W2PP64 1363 aa8.44□□□□□ -1.06
SF3B1-201ENST00000335508 TRIM6-TRIM34B2RNG4 842 aa8.44□□□□□ -1.06
SF3B1-201ENST00000335508 SLAIN2Q9P270 581 aa8.44□□□□□ -1.06
SF3B1-201ENST00000335508 ZRSR1Q15695 479 aaKnown RBP8.44□□□□□ -1.06
SF3B1-201ENST00000335508 FMNL2Q96PY5 1086 aa8.44□□□□□ -1.06
SF3B1-201ENST00000335508 HOXB7P09629 217 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 MVPQ14764 893 aaKnown RBP8.43□□□□□ -1.06
SF3B1-201ENST00000335508 DIAPH3Q9NSV4 1193 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 ERVK-7P63135 1459 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 KAT6BQ8WYB5 2073 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 RARSP54136 660 aaKnown RBP8.43□□□□□ -1.06
SF3B1-201ENST00000335508 AGLP35573 1532 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 EFCAB6Q5THR3 1501 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 ST18O60284 1047 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 HSP90AB3PQ58FF7 597 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 SURF6O75683 361 aaKnown RBP8.43□□□□□ -1.06
SF3B1-201ENST00000335508 DUSP27Q5VZP5 1158 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 SSH1Q8WYL5 1049 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 ANKRD24Q8TF21 1146 aa8.43□□□□□ -1.06
SF3B1-201ENST00000335508 PANK1Q8TE04 598 aa8.42□□□□□ -1.06
SF3B1-201ENST00000335508 KIF24Q5T7B8 1368 aa8.42□□□□□ -1.06
SF3B1-201ENST00000335508 TTC37Q6PGP7 1564 aa8.42□□□□□ -1.06
SF3B1-201ENST00000335508 PREX2Q70Z35 1606 aa8.42□□□□□ -1.06
SF3B1-201ENST00000335508 RNF20Q5VTR2 975 aa8.42□□□□□ -1.06
SF3B1-201ENST00000335508 CCDC34Q96HJ3 373 aa8.42□□□□□ -1.06
SF3B1-201ENST00000335508 BTBD11A6QL63 1104 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 SMARCC1Q92922 1105 aaPredicted RBP8.41□□□□□ -1.06
SF3B1-201ENST00000335508 SBNO1A3KN83 1393 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 PDE4AP27815 886 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 IL27Q8NEV9 243 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 RBM33Q96EV2 1170 aaKnown RBP8.41□□□□□ -1.06
SF3B1-201ENST00000335508 RBM42Q9BTD8 480 aaKnown RBP8.41□□□□□ -1.06
SF3B1-201ENST00000335508 TMOD3Q9NYL9 352 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 CHD1O14646 1710 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 PLXNC1O60486 1568 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 GOLGA6L4A6NEF3 574 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 PKNOX2Q96KN3 472 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 RBM19Q9Y4C8 960 aaKnown RBP8.41□□□□□ -1.06
SF3B1-201ENST00000335508 MYO5CQ9NQX4 1742 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 EIF4A2Q14240 407 aaKnown RBP8.41□□□□□ -1.06
SF3B1-201ENST00000335508 HYPKQ9NX55 129 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.41□□□□□ -1.062e-21■■■■□ 21.6
SF3B1-201ENST00000335508 PTMSP20962 102 aa8.41□□□□□ -1.06
SF3B1-201ENST00000335508 NUTM2BA6NNL0 878 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-201ENST00000335508 NUTM2EB1AL46 878 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-201ENST00000335508 AIMP1Q12904 312 aaKnown RBP8.4□□□□□ -1.06
SF3B1-201ENST00000335508 NUTM2AQ8IVF1 878 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-201ENST00000335508 AKAP4Q5JQC9 854 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 DCAF5Q96JK2 942 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 CEP126Q9P2H0 1117 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 TMEM94Q12767 1356 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 PTPRCP08575 1304 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 FANCIQ9NVI1 1328 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 KIF6Q6ZMV9 814 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 HECW2Q9P2P5 1572 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 NCKAP5LQ9HCH0 1330 aa8.4□□□□□ -1.06
SF3B1-201ENST00000335508 LNPKQ9C0E8 428 aa8.4□□□□□ -1.07
SF3B1-201ENST00000335508 ZNF652Q9Y2D9 606 aa8.4□□□□□ -1.07
SF3B1-201ENST00000335508 ABCC3O15438 1527 aa8.4□□□□□ -1.07
SF3B1-201ENST00000335508 AATKQ6ZMQ8 1374 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 SF3B2Q13435 895 aaKnown RBP8.39□□□□□ -1.07
SF3B1-201ENST00000335508 ORAI2Q96SN7 254 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 NOP58Q9Y2X3 529 aaKnown RBP8.39□□□□□ -1.07
SF3B1-201ENST00000335508 PLEKHH1Q9ULM0 1364 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 G3V3G9 751 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 SNRPA1P09661 255 aaKnown RBP8.39□□□□□ -1.07
SF3B1-201ENST00000335508 PDE4CQ08493 712 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 DCAF8Q5TAQ9 597 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 PRDM15P57071 1507 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-201ENST00000335508 ABCA9Q8IUA7 1624 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 HIP1O00291 1037 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 PIP4K2BP78356 416 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 NECTIN2Q92692 538 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 GBP4Q96PP9 640 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 EYA1Q99502 592 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 LMTK2Q8IWU2 1503 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 ZNF526Q8TF50 670 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-201ENST00000335508 ATP6V1DQ9Y5K8 247 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 INTS3Q68E01 1043 aaKnown RBP8.39□□□□□ -1.07
SF3B1-201ENST00000335508 MCM10Q7L590 875 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 HOMEZQ8IX15 550 aa8.39□□□□□ -1.07
SF3B1-201ENST00000335508 NPHP4O75161 1426 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-201ENST00000335508 FLIIQ13045 1269 aa8.38□□□□□ -1.07
SF3B1-201ENST00000335508 ZCRB1Q8TBF4 217 aaKnown RBP8.38□□□□□ -1.07
SF3B1-201ENST00000335508 THUMPD2Q9BTF0 503 aaKnown RBP8.38□□□□□ -1.07
SF3B1-201ENST00000335508 NKTRP30414 1462 aaKnown RBP8.38□□□□□ -1.07
SF3B1-201ENST00000335508 BCAR3O75815 825 aa8.38□□□□□ -1.07
SF3B1-201ENST00000335508 DNAAF4Q8WXU2 420 aa8.38□□□□□ -1.07
SF3B1-201ENST00000335508 SHROOM2Q13796 1616 aa8.38□□□□□ -1.07
SF3B1-201ENST00000335508 IL2RBP14784 551 aa8.38□□□□□ -1.07
SF3B1-201ENST00000335508 MFAP1P55081 439 aaKnown RBP8.38□□□□□ -1.07
SF3B1-201ENST00000335508 ZCCHC11Q5TAX3 1644 aaKnown RBP8.38□□□□□ -1.07
SF3B1-201ENST00000335508 ALDH1L1O75891 902 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms