RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 NUTM2GQ5VZR2 741 aa18.45■□□□□ 0.54
VRK3-201ENST00000316763 TRMT2AQ8IZ69 625 aaKnown RBP18.45■□□□□ 0.54
VRK3-201ENST00000316763 E9PSI1 815 aa18.44■□□□□ 0.54
VRK3-201ENST00000316763 COL16A1Q07092 1604 aaPredicted RBP18.44■□□□□ 0.54
VRK3-201ENST00000316763 TNS3Q68CZ2 1445 aa18.44■□□□□ 0.54
VRK3-201ENST00000316763 ANP32AP39687 249 aaKnown RBP18.43■□□□□ 0.54
VRK3-201ENST00000316763 LRRC59Q96AG4 307 aaKnown RBP18.43■□□□□ 0.54
VRK3-201ENST00000316763 MS4A1P11836 297 aa18.43■□□□□ 0.54
VRK3-201ENST00000316763 NLRP6P59044 892 aa18.43■□□□□ 0.54
VRK3-201ENST00000316763 EMILIN1Q9Y6C2 1016 aa18.43■□□□□ 0.54
VRK3-201ENST00000316763 CDK12Q9NYV4 1490 aaPredicted RBP18.42■□□□□ 0.54
VRK3-201ENST00000316763 USP54Q70EL1 1684 aa18.42■□□□□ 0.54
VRK3-201ENST00000316763 MARF1Q9Y4F3 1742 aaKnown RBP18.41■□□□□ 0.54
VRK3-201ENST00000316763 DIAPH1O60610 1272 aaKnown RBP18.4■□□□□ 0.54
VRK3-201ENST00000316763 HSPA1LP34931 641 aa18.4■□□□□ 0.54
VRK3-201ENST00000316763 RRS1Q15050 365 aaKnown RBP18.4■□□□□ 0.54
VRK3-201ENST00000316763 MAP2P11137 1827 aaKnown RBP18.4■□□□□ 0.54
VRK3-201ENST00000316763 ARHGEF10O15013 1369 aa18.39■□□□□ 0.54
VRK3-201ENST00000316763 PLEKHG5O94827 1062 aa18.39■□□□□ 0.53
VRK3-201ENST00000316763 FBXO41Q8TF61 875 aa18.39■□□□□ 0.53
VRK3-201ENST00000316763 PPM1GO15355 546 aaPredicted RBP18.38■□□□□ 0.53
VRK3-201ENST00000316763 U2AF1L5P0DN76 240 aaPredicted RBP18.37■□□□□ 0.53
VRK3-201ENST00000316763 U2AF1Q01081 240 aaKnown RBP eCLIP18.37■□□□□ 0.53
VRK3-201ENST00000316763 C20orf194Q5TEA3 1177 aa18.37■□□□□ 0.53
VRK3-201ENST00000316763 RUNDC1Q96C34 613 aa18.37■□□□□ 0.53
VRK3-201ENST00000316763 CABLES1Q8TDN4 633 aa18.36■□□□□ 0.53
VRK3-201ENST00000316763 IL13P35225 146 aa18.35■□□□□ 0.53
VRK3-201ENST00000316763 MED1Q15648 1581 aaPredicted RBP18.35■□□□□ 0.53
VRK3-201ENST00000316763 NOP58Q9Y2X3 529 aaKnown RBP18.35■□□□□ 0.53
VRK3-201ENST00000316763 CRYBG1Q9Y4K1 1723 aa18.34■□□□□ 0.53
VRK3-201ENST00000316763 USP19O94966 1318 aa18.34■□□□□ 0.53
VRK3-201ENST00000316763 MAP3K19Q56UN5 1328 aa18.34■□□□□ 0.53
VRK3-201ENST00000316763 U2SURPO15042 1029 aaKnown RBP18.34■□□□□ 0.53
VRK3-201ENST00000316763 SOX12O15370 315 aa18.34■□□□□ 0.53
VRK3-201ENST00000316763 IPO9Q96P70 1041 aaKnown RBP18.34■□□□□ 0.53
VRK3-201ENST00000316763 CENPQQ7L2Z9 268 aaPredicted RBP18.33■□□□□ 0.53
VRK3-201ENST00000316763 WWC1Q8IX03 1113 aa18.33■□□□□ 0.53
VRK3-201ENST00000316763 SPINK5Q9NQ38 1064 aaPredicted RBP18.33■□□□□ 0.53
VRK3-201ENST00000316763 COL22A1Q8NFW1 1626 aaPredicted RBP18.33■□□□□ 0.52
VRK3-201ENST00000316763 GCP02774 474 aa18.33■□□□□ 0.52
VRK3-201ENST00000316763 PDE4AP27815 886 aa18.33■□□□□ 0.52
VRK3-201ENST00000316763 PLEKHF1Q96S99 279 aa18.33■□□□□ 0.52
VRK3-201ENST00000316763 PEAK1Q9H792 1746 aa18.32■□□□□ 0.52
VRK3-201ENST00000316763 KIF24Q5T7B8 1368 aa18.32■□□□□ 0.52
VRK3-201ENST00000316763 PHRF1Q9P1Y6 1649 aaKnown RBP18.32■□□□□ 0.52
VRK3-201ENST00000316763 SLIT3O75094 1523 aa18.32■□□□□ 0.52
VRK3-201ENST00000316763 JCADQ9P266 1359 aa18.31■□□□□ 0.52
VRK3-201ENST00000316763 ABCA3Q99758 1704 aa18.31■□□□□ 0.52
VRK3-201ENST00000316763 FCHSD2O94868 740 aa18.31■□□□□ 0.52
VRK3-201ENST00000316763 NCBP3Q53F19 620 aaKnown RBP18.31■□□□□ 0.52
VRK3-201ENST00000316763 BACH2Q9BYV9 841 aa18.31■□□□□ 0.52
VRK3-201ENST00000316763 FLT4P35916 1363 aa18.3■□□□□ 0.52
VRK3-201ENST00000316763 TCP11L2Q8N4U5 519 aa18.3■□□□□ 0.52
VRK3-201ENST00000316763 KCNH5Q8NCM2 988 aa18.3■□□□□ 0.52
VRK3-201ENST00000316763 KDM2BQ8NHM5 1336 aa18.3■□□□□ 0.52
VRK3-201ENST00000316763 NFAT5O94916 1531 aa18.3■□□□□ 0.52
VRK3-201ENST00000316763 HSP90AB2PQ58FF8 381 aa18.29■□□□□ 0.52
VRK3-201ENST00000316763 WDR63Q8IWG1 891 aa18.29■□□□□ 0.52
VRK3-201ENST00000316763 EIF4A2Q14240 407 aaKnown RBP18.29■□□□□ 0.52
VRK3-201ENST00000316763 PNNQ9H307 717 aaKnown RBP18.29■□□□□ 0.52
VRK3-201ENST00000316763 HAP1P54257 671 aaPredicted RBP18.28■□□□□ 0.52
VRK3-201ENST00000316763 CCDC27Q2M243 656 aa18.28■□□□□ 0.52
VRK3-201ENST00000316763 PHF23Q9BUL5 403 aaPredicted RBP18.28■□□□□ 0.52
VRK3-201ENST00000316763 RSPH6AQ9H0K4 717 aa18.28■□□□□ 0.52
VRK3-201ENST00000316763 ZC3H6P61129 1189 aaKnown RBP18.27■□□□□ 0.52
VRK3-201ENST00000316763 ZBTB47Q9UFB7 747 aaPredicted RBP18.27■□□□□ 0.52
VRK3-201ENST00000316763 BCAR3O75815 825 aa18.27■□□□□ 0.51
VRK3-201ENST00000316763 PDE3AQ14432 1141 aa18.27■□□□□ 0.51
VRK3-201ENST00000316763 RTL1A6NKG5 1358 aa18.27■□□□□ 0.51
VRK3-201ENST00000316763 LTN1O94822 1766 aa18.26■□□□□ 0.51
VRK3-201ENST00000316763 NUTM2BA6NNL0 878 aaPredicted RBP18.26■□□□□ 0.51
VRK3-201ENST00000316763 NUTM2EB1AL46 878 aaPredicted RBP18.26■□□□□ 0.51
VRK3-201ENST00000316763 AMPHP49418 695 aa18.26■□□□□ 0.51
VRK3-201ENST00000316763 NEUROD2Q15784 382 aa18.26■□□□□ 0.51
VRK3-201ENST00000316763 NUTM2AQ8IVF1 878 aaPredicted RBP18.26■□□□□ 0.51
VRK3-201ENST00000316763 HOXC9P31274 260 aa18.25■□□□□ 0.51
VRK3-201ENST00000316763 ARHGEF25Q86VW2 580 aa18.25■□□□□ 0.51
VRK3-201ENST00000316763 ZBTB7CA1YPR0 619 aa18.24■□□□□ 0.51
VRK3-201ENST00000316763 CANXP27824 592 aaKnown RBP18.24■□□□□ 0.51
VRK3-201ENST00000316763 SPATA31A6Q5VVP1 1343 aa18.23■□□□□ 0.51
VRK3-201ENST00000316763 PRKAR2BP31323 418 aa18.23■□□□□ 0.51
VRK3-201ENST00000316763 RRP7AQ9Y3A4 280 aaKnown RBP18.23■□□□□ 0.51
VRK3-201ENST00000316763 KIAA0232Q92628 1395 aa18.23■□□□□ 0.51
VRK3-201ENST00000316763 MAPK8IP3Q9UPT6 1336 aa18.23■□□□□ 0.51
VRK3-201ENST00000316763 HMOX1P09601 288 aa18.23■□□□□ 0.51
VRK3-201ENST00000316763 RGPD1P0DJD0 1748 aa18.23■□□□□ 0.51
VRK3-201ENST00000316763 TMPOP42166 694 aaKnown RBP18.22■□□□□ 0.51
VRK3-201ENST00000316763 IP6K1Q92551 441 aa18.22■□□□□ 0.51
VRK3-201ENST00000316763 MYH16Q9H6N6 1097 aa18.22■□□□□ 0.51
VRK3-201ENST00000316763 CPDO75976 1380 aa18.22■□□□□ 0.51
VRK3-201ENST00000316763 ADAMTS2O95450 1211 aa18.21■□□□□ 0.51
VRK3-201ENST00000316763 CHRNA2Q15822 529 aa18.21■□□□□ 0.51
VRK3-201ENST00000316763 NPM2Q86SE8 214 aaKnown RBP18.21■□□□□ 0.51
VRK3-201ENST00000316763 RGPD5Q99666 1765 aa18.2■□□□□ 0.5
VRK3-201ENST00000316763 AAMPQ13685 434 aa18.2■□□□□ 0.5
VRK3-201ENST00000316763 PRDM11Q9NQV5 511 aa18.2■□□□□ 0.5
VRK3-201ENST00000316763 COL18A1P39060 1754 aa18.2■□□□□ 0.5
VRK3-201ENST00000316763 FAM83GA6ND36 823 aa18.19■□□□□ 0.5
VRK3-201ENST00000316763 PHACTR3Q96KR7 559 aa18.19■□□□□ 0.5
VRK3-201ENST00000316763 IGSF1Q8N6C5 1336 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms