RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 SDF4Q9BRK5 362 aa19.09■□□□□ 0.65
USP42-201ENST00000306177 TNNT3P45378 269 aaPredicted RBP19.09■□□□□ 0.65
USP42-201ENST00000306177 XPCQ01831 940 aaPredicted RBP19.09■□□□□ 0.65
USP42-201ENST00000306177 CNNM1Q9NRU3 951 aa19.09■□□□□ 0.65
USP42-201ENST00000306177 TRAK2O60296 914 aa19.09■□□□□ 0.65
USP42-201ENST00000306177 AEBP2Q6ZN18 517 aaPredicted RBP19.09■□□□□ 0.65
USP42-201ENST00000306177 PRDM11Q9NQV5 511 aa19.09■□□□□ 0.65
USP42-201ENST00000306177 GPATCH8Q9UKJ3 1502 aaKnown RBP19.09■□□□□ 0.65
USP42-201ENST00000306177 TTC39AQ5SRH9 613 aa19.09■□□□□ 0.65
USP42-201ENST00000306177 BACH2Q9BYV9 841 aa19.09■□□□□ 0.65
USP42-201ENST00000306177 LETM1O95202 739 aaPredicted RBP19.08■□□□□ 0.65
USP42-201ENST00000306177 OLFM4Q6UX06 510 aa19.08■□□□□ 0.65
USP42-201ENST00000306177 CHD1LQ86WJ1 897 aa19.08■□□□□ 0.65
USP42-201ENST00000306177 CCDC43Q96MW1 224 aaKnown RBP19.08■□□□□ 0.65
USP42-201ENST00000306177 NASPP49321 788 aaPredicted RBP19.08■□□□□ 0.64
USP42-201ENST00000306177 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.08■□□□□ 0.64
USP42-201ENST00000306177 DDX54Q8TDD1 881 aaKnown RBP19.08■□□□□ 0.64
USP42-201ENST00000306177 DENND4BO75064 1496 aaPredicted RBP19.08■□□□□ 0.64
USP42-201ENST00000306177 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.06■□□□□ 0.64
USP42-201ENST00000306177 FAM43AQ8N2R8 423 aa19.05■□□□□ 0.64
USP42-201ENST00000306177 CYP46A1Q9Y6A2 500 aa19.05■□□□□ 0.64
USP42-201ENST00000306177 SLC3A2P08195 630 aaKnown RBP19.05■□□□□ 0.64
USP42-201ENST00000306177 GNL3LQ9NVN8 582 aaKnown RBP19.05■□□□□ 0.64
USP42-201ENST00000306177 BTBD11A6QL63 1104 aa19.05■□□□□ 0.64
USP42-201ENST00000306177 SIL1Q9H173 461 aa19.05■□□□□ 0.64
USP42-201ENST00000306177 IFT57Q9NWB7 429 aa19.05■□□□□ 0.64
USP42-201ENST00000306177 DHX29Q7Z478 1369 aaKnown RBP19.05■□□□□ 0.64
USP42-201ENST00000306177 NOS1P29475 1434 aa19.05■□□□□ 0.64
USP42-201ENST00000306177 CAVIN1Q6NZI2 390 aaKnown RBP19.05■□□□□ 0.64
USP42-201ENST00000306177 CWC22Q9HCG8 908 aaKnown RBP19.05■□□□□ 0.64
USP42-201ENST00000306177 RPAP2Q8IXW5 612 aaPredicted RBP19.04■□□□□ 0.64
USP42-201ENST00000306177 MYL6BP14649 208 aa19.04■□□□□ 0.64
USP42-201ENST00000306177 SCAF11Q99590 1463 aaKnown RBP19.04■□□□□ 0.64
USP42-201ENST00000306177 ZC3H6P61129 1189 aaKnown RBP19.04■□□□□ 0.64
USP42-201ENST00000306177 CCDC39Q9UFE4 941 aa19.04■□□□□ 0.64
USP42-201ENST00000306177 ANKRD1Q15327 319 aa19.04■□□□□ 0.64
USP42-201ENST00000306177 NME9Q86XW9 330 aa19.04■□□□□ 0.64
USP42-201ENST00000306177 KCNH5Q8NCM2 988 aa19.04■□□□□ 0.64
USP42-201ENST00000306177 KINO60870 393 aaKnown RBP19.03■□□□□ 0.64
USP42-201ENST00000306177 PRPF40AO75400 957 aaKnown RBP19.03■□□□□ 0.64
USP42-201ENST00000306177 SRGAP3O43295 1099 aa19.03■□□□□ 0.64
USP42-201ENST00000306177 THUMPD2Q9BTF0 503 aaKnown RBP19.03■□□□□ 0.64
USP42-201ENST00000306177 RNF214Q8ND24 703 aa19.03■□□□□ 0.64
USP42-201ENST00000306177 PRM3Q9NNZ6 103 aa19.03■□□□□ 0.64
USP42-201ENST00000306177 GNAT3A8MTJ3 354 aa19.03■□□□□ 0.64
USP42-201ENST00000306177 ZNF396Q96N95 335 aaPredicted RBP19.03■□□□□ 0.64
USP42-201ENST00000306177 RAPGEF6Q8TEU7 1601 aa19.02■□□□□ 0.64
USP42-201ENST00000306177 MTMR7Q9Y216 660 aa19.02■□□□□ 0.64
USP42-201ENST00000306177 K7ELQ4 463 aaPredicted RBP19.02■□□□□ 0.63
USP42-201ENST00000306177 SAMD1Q6SPF0 538 aaPredicted RBP19.02■□□□□ 0.63
USP42-201ENST00000306177 WASLO00401 505 aaPredicted RBP19.01■□□□□ 0.63
USP42-201ENST00000306177 RRP12Q5JTH9 1297 aaKnown RBP19.01■□□□□ 0.63
USP42-201ENST00000306177 CCDC57Q2TAC2 916 aa19.01■□□□□ 0.63
USP42-201ENST00000306177 AEBP1Q8IUX7 1158 aa19.01■□□□□ 0.63
USP42-201ENST00000306177 ATP10BO94823 1461 aa19■□□□□ 0.63
USP42-201ENST00000306177 KDM4AO75164 1064 aa19■□□□□ 0.63
USP42-201ENST00000306177 FIBPO43427 364 aa19■□□□□ 0.63
USP42-201ENST00000306177 AACSQ86V21 672 aa19■□□□□ 0.63
USP42-201ENST00000306177 TMEM57Q8N5G2 664 aa19■□□□□ 0.63
USP42-201ENST00000306177 C14orf93Q9H972 538 aaKnown RBP19■□□□□ 0.63
USP42-201ENST00000306177 AMOTL2Q9Y2J4 779 aa19■□□□□ 0.63
USP42-201ENST00000306177 NACAP1Q9BZK3 213 aa18.99■□□□□ 0.63
USP42-201ENST00000306177 TSPY26PQ9H489 355 aa18.99■□□□□ 0.63
USP42-201ENST00000306177 UGGT2Q9NYU1 1516 aa18.99■□□□□ 0.63
USP42-201ENST00000306177 MCM10Q7L590 875 aa18.99■□□□□ 0.63
USP42-201ENST00000306177 CEBPAP49715 358 aaPredicted RBP18.99■□□□□ 0.63
USP42-201ENST00000306177 EMILIN1Q9Y6C2 1016 aa18.99■□□□□ 0.63
USP42-201ENST00000306177 ABCC11Q96J66 1382 aa18.98■□□□□ 0.63
USP42-201ENST00000306177 NUTM2BA6NNL0 878 aaPredicted RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 NUTM2EB1AL46 878 aaPredicted RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 MAP4K4O95819 1239 aaPredicted RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 STK38Q15208 465 aa18.98■□□□□ 0.63
USP42-201ENST00000306177 ZSCAN25Q6NSZ9 544 aa18.98■□□□□ 0.63
USP42-201ENST00000306177 NUTM2AQ8IVF1 878 aaPredicted RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 ATP2B1P20020 1258 aa18.98■□□□□ 0.63
USP42-201ENST00000306177 PPP6R1Q9UPN7 881 aa18.98■□□□□ 0.63
USP42-201ENST00000306177 PTPRKQ15262 1439 aa18.98■□□□□ 0.63
USP42-201ENST00000306177 ANO8Q9HCE9 1232 aaPredicted RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 WDR33Q9C0J8 1336 aaKnown RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 IKQ13123 557 aaPredicted RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 NUP153P49790 1475 aaKnown RBP18.98■□□□□ 0.63
USP42-201ENST00000306177 KLHL34Q8N239 644 aa18.97■□□□□ 0.63
USP42-201ENST00000306177 TRIM5Q9C035 493 aa18.97■□□□□ 0.63
USP42-201ENST00000306177 KDM5BQ9UGL1 1544 aa18.97■□□□□ 0.63
USP42-201ENST00000306177 MNS1Q8NEH6 495 aa18.97■□□□□ 0.63
USP42-201ENST00000306177 MPHOSPH8Q99549 860 aa18.97■□□□□ 0.63
USP42-201ENST00000306177 MIS18AQ9NYP9 233 aa18.97■□□□□ 0.63
USP42-201ENST00000306177 DCTN1Q14203 1278 aa18.97■□□□□ 0.63
USP42-201ENST00000306177 DUSP27Q5VZP5 1158 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 JMYQ8N9B5 988 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 PLCH2O75038 1416 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 DISP3Q9P2K9 1392 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 ALDH1L2Q3SY69 923 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 PDILTQ8N807 584 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 FAM13BQ9NYF5 915 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 PHF8Q9UPP1 1060 aa18.96■□□□□ 0.63
USP42-201ENST00000306177 TXLNAP40222 546 aa18.95■□□□□ 0.62
USP42-201ENST00000306177 NAP1L1P55209 391 aaKnown RBP18.95■□□□□ 0.62
USP42-201ENST00000306177 IL1RAPL2Q9NP60 686 aa18.95■□□□□ 0.62
USP42-201ENST00000306177 CEP126Q9P2H0 1117 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms