RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 TRIM22Q8IYM9 498 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 PDZRN3Q9UPQ7 1066 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 IQGAP2Q13576 1575 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 PPP6R1Q9UPN7 881 aa9.04□□□□□ -0.96
SF3B3-201ENST00000302516 MVPQ14764 893 aaKnown RBP9.03□□□□□ -0.96
SF3B3-201ENST00000302516 NUTM2DQ5VT03 806 aaPredicted RBP9.03□□□□□ -0.96
SF3B3-201ENST00000302516 RIC3Q7Z5B4 369 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 ADAMTS8Q9UP79 889 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 LRRCC1Q9C099 1032 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 FIBPO43427 364 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 IGF1RP08069 1367 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 CCDC181Q5TID7 509 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.03□□□□□ -0.969e-7■■■■■ 100.2
SF3B3-201ENST00000302516 THOC2Q8NI27 1593 aaKnown RBP9.03□□□□□ -0.96
SF3B3-201ENST00000302516 EVA1CP58658 441 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 WASHC4Q2M389 1173 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 WASF1Q92558 559 aa9.03□□□□□ -0.96
SF3B3-201ENST00000302516 EZRP15311 586 aaKnown RBP9.02□□□□□ -0.97
SF3B3-201ENST00000302516 PNISRQ8TF01 805 aaKnown RBP9.02□□□□□ -0.97
SF3B3-201ENST00000302516 GNL3LQ9NVN8 582 aaKnown RBP9.02□□□□□ -0.97
SF3B3-201ENST00000302516 NEMFO60524 1076 aa9.02□□□□□ -0.97
SF3B3-201ENST00000302516 POTEB2H3BUK9 544 aa9.02□□□□□ -0.97
SF3B3-201ENST00000302516 CCDC27Q2M243 656 aa9.02□□□□□ -0.97
SF3B3-201ENST00000302516 ZSCAN25Q6NSZ9 544 aa9.02□□□□□ -0.97
SF3B3-201ENST00000302516 TCP11L2Q8N4U5 519 aa9.02□□□□□ -0.97
SF3B3-201ENST00000302516 CGNQ9P2M7 1197 aaKnown RBP9.02□□□□□ -0.97
SF3B3-201ENST00000302516 ABCC11Q96J66 1382 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 DDX11Q96FC9 970 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 RBM33Q96EV2 1170 aaKnown RBP9.01□□□□□ -0.97
SF3B3-201ENST00000302516 NUP62CLQ9H1M0 184 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 MCM4P33991 863 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 PSME1Q06323 249 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 CHD1LQ86WJ1 897 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 ZSCAN12O43309 604 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 CCDC148Q8NFR7 591 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 SLC26A8Q96RN1 970 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 GBP2P32456 591 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-201ENST00000302516 ME1P48163 572 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 SEPT7Q16181 437 aaKnown RBP9.01□□□□□ -0.97
SF3B3-201ENST00000302516 FOSBP53539 338 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 NOL7Q9UMY1 257 aaKnown RBP9.01□□□□□ -0.97
SF3B3-201ENST00000302516 GPRASP1Q5JY77 1395 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 CAVIN2O95810 425 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 KIF6Q6ZMV9 814 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 SPATA32Q96LK8 384 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 NACAP1Q9BZK3 213 aa9.01□□□□□ -0.97
SF3B3-201ENST00000302516 TRHP20396 242 aaPredicted RBP9□□□□□ -0.97
SF3B3-201ENST00000302516 SPC24Q8NBT2 197 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 CEP131Q9UPN4 1083 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 NEUROD6Q96NK8 337 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 ATF7IPQ6VMQ6 1270 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 RAPGEF4Q8WZA2 1011 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 CFAP43Q8NDM7 1665 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 MAP3K11Q16584 847 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 NOB1Q9ULX3 412 aaKnown RBP9□□□□□ -0.97
SF3B3-201ENST00000302516 CCDC183Q5T5S1 534 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 ATAD2Q6PL18 1390 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 TWISTNBQ3B726 338 aaPredicted RBP9□□□□□ -0.97
SF3B3-201ENST00000302516 CALCOCO1Q9P1Z2 691 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 CTNNA3Q9UI47 895 aa9□□□□□ -0.97
SF3B3-201ENST00000302516 NESP48681 1621 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 ANKRD30BQ9BXX2 1392 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 BIVM-ERCC5R4GMW8 1640 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 CCDC158Q5M9N0 1113 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 ZNF397Q8NF99 534 aaPredicted RBP8.99□□□□□ -0.97
SF3B3-201ENST00000302516 ENOX2Q16206 610 aaKnown RBP8.99□□□□□ -0.97
SF3B3-201ENST00000302516 SH2B1Q9NRF2 756 aaPredicted RBP8.99□□□□□ -0.97
SF3B3-201ENST00000302516 SHTN1A0MZ66 631 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 CTAGE5O15320 804 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 RAD21O60216 631 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 SURF6O75683 361 aaKnown RBP8.99□□□□□ -0.97
SF3B3-201ENST00000302516 TTLL5Q6EMB2 1281 aa8.99□□□□□ -0.97
SF3B3-201ENST00000302516 EPRSP07814 1512 aaKnown RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 RAD54L2Q9Y4B4 1467 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 MTHFSP49914 203 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 LARP1BQ659C4 914 aaKnown RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 UPF3BQ9BZI7 483 aaKnown RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 JAKMIP3Q5VZ66 844 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 IMMTQ16891 758 aaKnown RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 CCDC57Q2TAC2 916 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 ZFYVE27Q5T4F4 411 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 HMOX1P09601 288 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 TTC39AQ5SRH9 613 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 DESP17661 470 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 KIF18AQ8NI77 898 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 TROQ12816 1431 aaPredicted RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 MICALCLQ6ZW33 695 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 KRT18P05783 430 aaKnown RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 TMCO3Q6UWJ1 677 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 NECTIN2Q92692 538 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 SCAND2PQ9GZW5 306 aaPredicted RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 NCAPD3P42695 1498 aa8.98□□□□□ -0.97
SF3B3-201ENST00000302516 PLEKHO1Q53GL0 409 aaPredicted RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 PHAXQ9H814 394 aaKnown RBP8.98□□□□□ -0.97
SF3B3-201ENST00000302516 CCDC69A6NI79 296 aa8.97□□□□□ -0.97
SF3B3-201ENST00000302516 EPB41L2O43491 1005 aaKnown RBP8.97□□□□□ -0.97
SF3B3-201ENST00000302516 UBXN4Q92575 508 aa8.97□□□□□ -0.97
SF3B3-201ENST00000302516 SFPQP23246 707 aaKnown RBP eCLIP8.97□□□□□ -0.97
SF3B3-201ENST00000302516 FILIP1Q7Z7B0 1213 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms