RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 KRT18P05783 430 aaKnown RBP13.65□□□□□ -0.22
USP53-201ENST00000274030 ZC3H6P61129 1189 aaKnown RBP13.65□□□□□ -0.22
USP53-201ENST00000274030 CWC27Q6UX04 472 aaKnown RBP13.65□□□□□ -0.22
USP53-201ENST00000274030 SLC3A2P08195 630 aaKnown RBP13.65□□□□□ -0.22
USP53-201ENST00000274030 ME1P48163 572 aa13.65□□□□□ -0.22
USP53-201ENST00000274030 MCM2P49736 904 aa13.65□□□□□ -0.22
USP53-201ENST00000274030 MVPQ14764 893 aaKnown RBP13.65□□□□□ -0.22
USP53-201ENST00000274030 AK7Q96M32 723 aa13.65□□□□□ -0.22
USP53-201ENST00000274030 MPHOSPH8Q99549 860 aa13.65□□□□□ -0.23
USP53-201ENST00000274030 ZHX3Q9H4I2 956 aa13.65□□□□□ -0.23
USP53-201ENST00000274030 CCDC57Q2TAC2 916 aa13.64□□□□□ -0.23
USP53-201ENST00000274030 CHD1LQ86WJ1 897 aa13.64□□□□□ -0.23
USP53-201ENST00000274030 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
USP53-201ENST00000274030 THEMISQ8N1K5 641 aaPredicted RBP13.64□□□□□ -0.23
USP53-201ENST00000274030 ZNF396Q96N95 335 aaPredicted RBP13.64□□□□□ -0.23
USP53-201ENST00000274030 PIBF1Q8WXW3 757 aa13.64□□□□□ -0.23
USP53-201ENST00000274030 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.64□□□□□ -0.23
USP53-201ENST00000274030 GNL3LQ9NVN8 582 aaKnown RBP13.63□□□□□ -0.23
USP53-201ENST00000274030 C9orf84Q5VXU9 1444 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 BTBD11A6QL63 1104 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 TXLNAP40222 546 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 BICDL1Q6ZP65 573 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 PRDM11Q9NQV5 511 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 LARP1BQ659C4 914 aaKnown RBP13.63□□□□□ -0.23
USP53-201ENST00000274030 BACH2Q9BYV9 841 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 RTEL1-TNFRSF6BF6WH68 1400 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 FILIP1LQ4L180 1135 aa13.63□□□□□ -0.23
USP53-201ENST00000274030 CCAR1Q8IX12 1150 aaKnown RBP13.63□□□□□ -0.23
USP53-201ENST00000274030 MAGEC2Q9UBF1 373 aaPredicted RBP13.63□□□□□ -0.23
USP53-201ENST00000274030 SERPINC1P01008 464 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 SYNJ2O15056 1496 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 WDR63Q8IWG1 891 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 LETM1O95202 739 aaPredicted RBP13.62□□□□□ -0.23
USP53-201ENST00000274030 DCTN1Q14203 1278 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 EXOC6BQ9Y2D4 811 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 KIAA1107Q9UPP5 1409 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 K7ELQ4 463 aaPredicted RBP13.62□□□□□ -0.23
USP53-201ENST00000274030 CCDC173Q0VFZ6 552 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 NUTM1Q86Y26 1132 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 SPG7Q9UQ90 795 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 RBM5P52756 815 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP53-201ENST00000274030 SKAP1Q86WV1 359 aa13.62□□□□□ -0.23
USP53-201ENST00000274030 JAKMIP1Q96N16 626 aaKnown RBP13.61□□□□□ -0.23
USP53-201ENST00000274030 CCDC69A6NI79 296 aa13.61□□□□□ -0.23
USP53-201ENST00000274030 NACAP1Q9BZK3 213 aa13.61□□□□□ -0.23
USP53-201ENST00000274030 ACBD3Q9H3P7 528 aa13.61□□□□□ -0.23
USP53-201ENST00000274030 FAM177A1Q8N128 213 aaPredicted RBP13.61□□□□□ -0.23
USP53-201ENST00000274030 TNMDQ9H2S6 317 aa13.61□□□□□ -0.23
USP53-201ENST00000274030 RBM10P98175 930 aaKnown RBP13.61□□□□□ -0.23
USP53-201ENST00000274030 MCM10Q7L590 875 aa13.61□□□□□ -0.23
USP53-201ENST00000274030 TRIM22Q8IYM9 498 aa13.61□□□□□ -0.23
USP53-201ENST00000274030 HFM1A2PYH4 1435 aa13.6□□□□□ -0.23
USP53-201ENST00000274030 TMEM57Q8N5G2 664 aa13.6□□□□□ -0.23
USP53-201ENST00000274030 CDR1P51861 262 aa13.6□□□□□ -0.23
USP53-201ENST00000274030 BLOC1S2Q6QNY1 142 aa13.6□□□□□ -0.23
USP53-201ENST00000274030 ERBINQ96RT1 1412 aa13.6□□□□□ -0.23
USP53-201ENST00000274030 PIP4K2BP78356 416 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 CEP126Q9P2H0 1117 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 PTCD1O75127 700 aaKnown RBP13.59□□□□□ -0.23
USP53-201ENST00000274030 WAPLQ7Z5K2 1190 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 KRI1Q8N9T8 703 aaKnown RBP13.59□□□□□ -0.23
USP53-201ENST00000274030 GRIN2BQ13224 1484 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 SMARCE1Q969G3 411 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 IL27Q8NEV9 243 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 DDX11Q96FC9 970 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 PDRG1Q9NUG6 133 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 SLC52A1Q9NWF4 448 aa13.59□□□□□ -0.23
USP53-201ENST00000274030 IDH1O75874 414 aaKnown RBP13.58□□□□□ -0.23
USP53-201ENST00000274030 KRT85P78386 507 aa13.58□□□□□ -0.23
USP53-201ENST00000274030 WDR33Q9C0J8 1336 aaKnown RBP13.58□□□□□ -0.23
USP53-201ENST00000274030 TDO2P48775 406 aa13.58□□□□□ -0.24
USP53-201ENST00000274030 JMYQ8N9B5 988 aa13.58□□□□□ -0.24
USP53-201ENST00000274030 SMARCA5O60264 1052 aaPredicted RBP13.58□□□□□ -0.24
USP53-201ENST00000274030 CCDC192P0DO97 292 aa13.58□□□□□ -0.24
USP53-201ENST00000274030 TMPOP42166 694 aaKnown RBP13.58□□□□□ -0.24
USP53-201ENST00000274030 RAI14Q9P0K7 980 aa13.58□□□□□ -0.24
USP53-201ENST00000274030 SSBP05455 408 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP53-201ENST00000274030 TANGO6Q9C0B7 1094 aa13.58□□□□□ -0.24
USP53-201ENST00000274030 ANKRD1Q15327 319 aa13.58□□□□□ -0.24
USP53-201ENST00000274030 ZSCAN29Q8IWY8 852 aaPredicted RBP13.58□□□□□ -0.24
USP53-201ENST00000274030 USHBP1Q8N6Y0 703 aa13.57□□□□□ -0.24
USP53-201ENST00000274030 NUDT16Q96DE0 195 aaKnown RBP13.57□□□□□ -0.24
USP53-201ENST00000274030 ABCF2Q9UG63 623 aa13.57□□□□□ -0.24
USP53-201ENST00000274030 SYCP1Q15431 976 aa13.57□□□□□ -0.24
USP53-201ENST00000274030 PAF1Q8N7H5 531 aa13.57□□□□□ -0.24
USP53-201ENST00000274030 ANKLE2Q86XL3 938 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 AEBP1Q8IUX7 1158 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 LRP2BPQ9P2M1 347 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 FERMT3Q86UX7 667 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 SPATA32Q96LK8 384 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 FCHSD2O94868 740 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 NFE2L2Q16236 605 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 SOGA3Q5TF21 947 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 PDCL3Q9H2J4 239 aa13.56□□□□□ -0.24
USP53-201ENST00000274030 NSD3Q9BZ95 1437 aa13.55□□□□□ -0.24
USP53-201ENST00000274030 UBAC1Q9BSL1 405 aa13.55□□□□□ -0.24
USP53-201ENST00000274030 UPF3BQ9BZI7 483 aaKnown RBP13.55□□□□□ -0.24
USP53-201ENST00000274030 DUSP27Q5VZP5 1158 aa13.55□□□□□ -0.24
USP53-201ENST00000274030 CASTP20810 708 aaKnown RBP13.55□□□□□ -0.24
USP53-201ENST00000274030 AXDND1Q5T1B0 1012 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms