RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 PHACTR3Q96KR7 559 aa29.46■■■□□ 2.31
HOXD9-201ENST00000249499 FRAT1Q92837 279 aaPredicted RBP29.44■■■□□ 2.3
HOXD9-201ENST00000249499 PEAK1Q9H792 1746 aa29.44■■■□□ 2.3
HOXD9-201ENST00000249499 EIF4A2Q14240 407 aaKnown RBP29.44■■■□□ 2.3
HOXD9-201ENST00000249499 RGPD1P0DJD0 1748 aa29.43■■■□□ 2.3
HOXD9-201ENST00000249499 PIK3C2AO00443 1686 aa29.43■■■□□ 2.3
HOXD9-201ENST00000249499 CLUAP1Q96AJ1 413 aa29.43■■■□□ 2.3
HOXD9-201ENST00000249499 KIF24Q5T7B8 1368 aa29.43■■■□□ 2.3
HOXD9-201ENST00000249499 ZKSCAN2Q63HK3 967 aa29.42■■■□□ 2.3
HOXD9-201ENST00000249499 PANK1Q8TE04 598 aa29.42■■■□□ 2.3
HOXD9-201ENST00000249499 SBNO1A3KN83 1393 aa29.41■■■□□ 2.3
HOXD9-201ENST00000249499 IFT57Q9NWB7 429 aa29.41■■■□□ 2.3
HOXD9-201ENST00000249499 ADGRL3Q9HAR2 1447 aa29.41■■■□□ 2.3
HOXD9-201ENST00000249499 FLT4P35916 1363 aa29.4■■■□□ 2.3
HOXD9-201ENST00000249499 GNAI1P63096 354 aa29.4■■■□□ 2.3
HOXD9-201ENST00000249499 ALDH1L2Q3SY69 923 aa29.4■■■□□ 2.3
HOXD9-201ENST00000249499 COG6Q9Y2V7 657 aa29.4■■■□□ 2.3
HOXD9-201ENST00000249499 ARHGEF10O15013 1369 aa29.38■■■□□ 2.29
HOXD9-201ENST00000249499 SMC4Q9NTJ3 1288 aa29.38■■■□□ 2.29
HOXD9-201ENST00000249499 BRPF1P55201 1214 aaPredicted RBP29.37■■■□□ 2.29
HOXD9-201ENST00000249499 ZNF853P0CG23 659 aa29.36■■■□□ 2.29
HOXD9-201ENST00000249499 NWD1Q149M9 1564 aa29.36■■■□□ 2.29
HOXD9-201ENST00000249499 MAP3K19Q56UN5 1328 aa29.36■■■□□ 2.29
HOXD9-201ENST00000249499 KIF16BQ96L93 1317 aa29.36■■■□□ 2.29
HOXD9-201ENST00000249499 BCL2L13Q9BXK5 485 aa29.36■■■□□ 2.29
HOXD9-201ENST00000249499 SSH1Q8WYL5 1049 aa29.35■■■□□ 2.29
HOXD9-201ENST00000249499 ZNF335Q9H4Z2 1342 aaPredicted RBP29.35■■■□□ 2.29
HOXD9-201ENST00000249499 DLG5Q8TDM6 1919 aa29.34■■■□□ 2.29
HOXD9-201ENST00000249499 STRCP1A6NGW2 1772 aa29.34■■■□□ 2.29
HOXD9-201ENST00000249499 DZIP1LQ8IYY4 767 aaKnown RBP29.34■■■□□ 2.29
HOXD9-201ENST00000249499 RLBP1P12271 317 aa29.33■■■□□ 2.29
HOXD9-201ENST00000249499 HSP90AB2PQ58FF8 381 aa29.33■■■□□ 2.29
HOXD9-201ENST00000249499 SULT6B1Q6IMI4 303 aa29.33■■■□□ 2.29
HOXD9-201ENST00000249499 MVPQ14764 893 aaKnown RBP29.32■■■□□ 2.28
HOXD9-201ENST00000249499 PHF8Q9UPP1 1060 aa29.32■■■□□ 2.28
HOXD9-201ENST00000249499 IPO8O15397 1037 aaKnown RBP29.31■■■□□ 2.28
HOXD9-201ENST00000249499 CFAP44Q96MT7 982 aa29.31■■■□□ 2.28
HOXD9-201ENST00000249499 MARF1Q9Y4F3 1742 aaKnown RBP29.31■■■□□ 2.28
HOXD9-201ENST00000249499 PDE4AP27815 886 aa29.31■■■□□ 2.28
HOXD9-201ENST00000249499 BACH2Q9BYV9 841 aa29.31■■■□□ 2.28
HOXD9-201ENST00000249499 LTBP4Q8N2S1 1624 aa29.31■■■□□ 2.28
HOXD9-201ENST00000249499 ATF7IPQ6VMQ6 1270 aa29.3■■■□□ 2.28
HOXD9-201ENST00000249499 FTSJ3Q8IY81 847 aaKnown RBP29.3■■■□□ 2.28
HOXD9-201ENST00000249499 KDRP35968 1356 aa29.3■■■□□ 2.28
HOXD9-201ENST00000249499 NLRP6P59044 892 aa29.29■■■□□ 2.28
HOXD9-201ENST00000249499 AEBP1Q8IUX7 1158 aa29.27■■■□□ 2.28
HOXD9-201ENST00000249499 TRIM27P14373 513 aa29.27■■■□□ 2.28
HOXD9-201ENST00000249499 AMPHP49418 695 aa29.26■■■□□ 2.27
HOXD9-201ENST00000249499 RTL1A6NKG5 1358 aa29.26■■■□□ 2.27
HOXD9-201ENST00000249499 IGSF1Q8N6C5 1336 aa29.25■■■□□ 2.27
HOXD9-201ENST00000249499 MBIPQ9NS73 344 aa29.25■■■□□ 2.27
HOXD9-201ENST00000249499 DDX19BQ9UMR2 479 aa29.25■■■□□ 2.27
HOXD9-201ENST00000249499 TNNQ9UQP3 1299 aa29.25■■■□□ 2.27
HOXD9-201ENST00000249499 IGHDP01880 384 aa29.24■■■□□ 2.27
HOXD9-201ENST00000249499 LAS1LQ9Y4W2 734 aaKnown RBP29.24■■■□□ 2.27
HOXD9-201ENST00000249499 VAMP4O75379 141 aa29.23■■■□□ 2.27
HOXD9-201ENST00000249499 ABTB2Q8N961 1025 aa29.23■■■□□ 2.27
HOXD9-201ENST00000249499 THUMPD2Q9BTF0 503 aaKnown RBP29.23■■■□□ 2.27
HOXD9-201ENST00000249499 NOB1Q9ULX3 412 aaKnown RBP29.23■■■□□ 2.27
HOXD9-201ENST00000249499 ANP32AP39687 249 aaKnown RBP29.23■■■□□ 2.27
HOXD9-201ENST00000249499 ARHGAP45Q92619 1136 aa29.23■■■□□ 2.27
HOXD9-201ENST00000249499 HAP1P54257 671 aaPredicted RBP29.21■■■□□ 2.27
HOXD9-201ENST00000249499 SOX12O15370 315 aa29.21■■■□□ 2.27
HOXD9-201ENST00000249499 RWDD1Q9H446 243 aaPredicted RBP29.19■■■□□ 2.26
HOXD9-201ENST00000249499 MSH5O43196 834 aa29.19■■■□□ 2.26
HOXD9-201ENST00000249499 HOXC9P31274 260 aa29.18■■■□□ 2.26
HOXD9-201ENST00000249499 PCDHB15Q9Y5E8 787 aa29.18■■■□□ 2.26
HOXD9-201ENST00000249499 FAM83GA6ND36 823 aa29.16■■■□□ 2.26
HOXD9-201ENST00000249499 PAK3O75914 559 aaPredicted RBP29.16■■■□□ 2.26
HOXD9-201ENST00000249499 TWISTNBQ3B726 338 aaPredicted RBP29.16■■■□□ 2.26
HOXD9-201ENST00000249499 MRPL50Q8N5N7 158 aaKnown RBP29.16■■■□□ 2.26
HOXD9-201ENST00000249499 EYA1Q99502 592 aa29.16■■■□□ 2.26
HOXD9-201ENST00000249499 CHMP4BQ9H444 224 aaKnown RBP29.16■■■□□ 2.26
HOXD9-201ENST00000249499 ESCO1Q5FWF5 840 aa29.15■■■□□ 2.26
HOXD9-201ENST00000249499 GAS2L2Q8NHY3 880 aa29.15■■■□□ 2.26
HOXD9-201ENST00000249499 KIAA0232Q92628 1395 aa29.15■■■□□ 2.26
HOXD9-201ENST00000249499 CHL1O00533 1208 aa29.14■■■□□ 2.26
HOXD9-201ENST00000249499 HTATSF1O43719 755 aaKnown RBP29.14■■■□□ 2.26
HOXD9-201ENST00000249499 FAM161AQ3B820 660 aa29.14■■■□□ 2.26
HOXD9-201ENST00000249499 NFAT5O94916 1531 aa29.14■■■□□ 2.25
HOXD9-201ENST00000249499 PHRF1Q9P1Y6 1649 aaKnown RBP29.14■■■□□ 2.25
HOXD9-201ENST00000249499 PSME1Q06323 249 aa29.13■■■□□ 2.25
HOXD9-201ENST00000249499 SKAP1Q86WV1 359 aa29.13■■■□□ 2.25
HOXD9-201ENST00000249499 XIRP1Q702N8 1843 aaKnown RBP29.13■■■□□ 2.25
HOXD9-201ENST00000249499 C14orf37Q86TY3 774 aa29.12■■■□□ 2.25
HOXD9-201ENST00000249499 ITPRIPQ8IWB1 547 aa29.12■■■□□ 2.25
HOXD9-201ENST00000249499 TSPYL6Q8N831 410 aa29.12■■■□□ 2.25
HOXD9-201ENST00000249499 KCNH5Q8NCM2 988 aa29.12■■■□□ 2.25
HOXD9-201ENST00000249499 CRB1P82279 1406 aa29.11■■■□□ 2.25
HOXD9-201ENST00000249499 DCTN1Q14203 1278 aa29.11■■■□□ 2.25
HOXD9-201ENST00000249499 TMEM57Q8N5G2 664 aa29.11■■■□□ 2.25
HOXD9-201ENST00000249499 CERKQ8TCT0 537 aa29.11■■■□□ 2.25
HOXD9-201ENST00000249499 ANP32EQ9BTT0 268 aa29.11■■■□□ 2.25
HOXD9-201ENST00000249499 KIF1AQ12756 1690 aa29.11■■■□□ 2.25
HOXD9-201ENST00000249499 HDAC1Q13547 482 aaPredicted RBP29.1■■■□□ 2.25
HOXD9-201ENST00000249499 NCOA3Q9Y6Q9 1424 aa29.09■■■□□ 2.25
HOXD9-201ENST00000249499 C8orf58Q8NAV2 365 aa29.09■■■□□ 2.25
HOXD9-201ENST00000249499 RBM33Q96EV2 1170 aaKnown RBP29.09■■■□□ 2.25
HOXD9-201ENST00000249499 IPO9Q96P70 1041 aaKnown RBP29.09■■■□□ 2.25
HOXD9-201ENST00000249499 MYT1Q01538 1121 aa29.08■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms