RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 APAF1O14727 1248 aa29.75■■■□□ 2.35
CDX1-201ENST00000231656 U2SURPO15042 1029 aaKnown RBP29.75■■■□□ 2.35
CDX1-201ENST00000231656 U2AF1L5P0DN76 240 aaPredicted RBP29.75■■■□□ 2.35
CDX1-201ENST00000231656 AMPHP49418 695 aa29.75■■■□□ 2.35
CDX1-201ENST00000231656 U2AF1Q01081 240 aaKnown RBP eCLIP29.75■■■□□ 2.35
CDX1-201ENST00000231656 HSP90AB2PQ58FF8 381 aa29.75■■■□□ 2.35
CDX1-201ENST00000231656 AHDC1Q5TGY3 1603 aaPredicted RBP29.74■■■□□ 2.35
CDX1-201ENST00000231656 IL13P35225 146 aa29.74■■■□□ 2.35
CDX1-201ENST00000231656 CRYBG1Q9Y4K1 1723 aa29.73■■■□□ 2.35
CDX1-201ENST00000231656 NGEFQ8N5V2 710 aa29.73■■■□□ 2.35
CDX1-201ENST00000231656 PHRF1Q9P1Y6 1649 aaKnown RBP29.73■■■□□ 2.35
CDX1-201ENST00000231656 HOXC9P31274 260 aa29.7■■■□□ 2.35
CDX1-201ENST00000231656 RRP1P56182 461 aaKnown RBP29.7■■■□□ 2.35
CDX1-201ENST00000231656 GOLGA2Q08379 1002 aa29.7■■■□□ 2.35
CDX1-201ENST00000231656 RTL1A6NKG5 1358 aa29.7■■■□□ 2.35
CDX1-201ENST00000231656 EIF4A2Q14240 407 aaKnown RBP29.69■■■□□ 2.34
CDX1-201ENST00000231656 CERKQ8TCT0 537 aa29.69■■■□□ 2.34
CDX1-201ENST00000231656 CABLES1Q8TDN4 633 aa29.69■■■□□ 2.34
CDX1-201ENST00000231656 UBAP1LF5GYI3 381 aa29.69■■■□□ 2.34
CDX1-201ENST00000231656 ARHGEF25Q86VW2 580 aa29.69■■■□□ 2.34
CDX1-201ENST00000231656 DUSP27Q5VZP5 1158 aa29.68■■■□□ 2.34
CDX1-201ENST00000231656 PIP4K2BP78356 416 aa29.67■■■□□ 2.34
CDX1-201ENST00000231656 RUNDC1Q96C34 613 aa29.67■■■□□ 2.34
CDX1-201ENST00000231656 SLFN5Q08AF3 891 aa29.66■■■□□ 2.34
CDX1-201ENST00000231656 IP6K1Q92551 441 aa29.66■■■□□ 2.34
CDX1-201ENST00000231656 TRMT2AQ8IZ69 625 aaKnown RBP29.65■■■□□ 2.34
CDX1-201ENST00000231656 ZBTB7CA1YPR0 619 aa29.64■■■□□ 2.34
CDX1-201ENST00000231656 ZC3H6P61129 1189 aaKnown RBP29.64■■■□□ 2.34
CDX1-201ENST00000231656 LRRC59Q96AG4 307 aaKnown RBP29.64■■■□□ 2.34
CDX1-201ENST00000231656 PHLPP1O60346 1717 aa29.64■■■□□ 2.33
CDX1-201ENST00000231656 RGPD1P0DJD0 1748 aa29.63■■■□□ 2.33
CDX1-201ENST00000231656 FCHSD2O94868 740 aa29.62■■■□□ 2.33
CDX1-201ENST00000231656 ABCA3Q99758 1704 aa29.62■■■□□ 2.33
CDX1-201ENST00000231656 PLEKHF1Q96S99 279 aa29.6■■■□□ 2.33
CDX1-201ENST00000231656 COL16A1Q07092 1604 aaPredicted RBP29.59■■■□□ 2.33
CDX1-201ENST00000231656 HMOX1P09601 288 aa29.59■■■□□ 2.33
CDX1-201ENST00000231656 RSPH6AQ9H0K4 717 aa29.59■■■□□ 2.33
CDX1-201ENST00000231656 B4GALNT3Q6L9W6 998 aa29.58■■■□□ 2.33
CDX1-201ENST00000231656 PNNQ9H307 717 aaKnown RBP29.58■■■□□ 2.33
CDX1-201ENST00000231656 TCP11L2Q8N4U5 519 aa29.57■■■□□ 2.32
CDX1-201ENST00000231656 PHF23Q9BUL5 403 aaPredicted RBP29.57■■■□□ 2.32
CDX1-201ENST00000231656 SPINK5Q9NQ38 1064 aaPredicted RBP29.57■■■□□ 2.32
CDX1-201ENST00000231656 WWC1Q8IX03 1113 aa29.57■■■□□ 2.32
CDX1-201ENST00000231656 RGPD5Q99666 1765 aa29.57■■■□□ 2.32
CDX1-201ENST00000231656 CPDO75976 1380 aa29.56■■■□□ 2.32
CDX1-201ENST00000231656 E9PSI1 815 aa29.56■■■□□ 2.32
CDX1-201ENST00000231656 LTV1Q96GA3 475 aaPredicted RBP29.56■■■□□ 2.32
CDX1-201ENST00000231656 TSHZ2Q9NRE2 1034 aa29.56■■■□□ 2.32
CDX1-201ENST00000231656 COL18A1P39060 1754 aa29.55■■■□□ 2.32
CDX1-201ENST00000231656 NCBP3Q53F19 620 aaKnown RBP29.55■■■□□ 2.32
CDX1-201ENST00000231656 KIAA0232Q92628 1395 aa29.55■■■□□ 2.32
CDX1-201ENST00000231656 PRKAR2BP31323 418 aa29.54■■■□□ 2.32
CDX1-201ENST00000231656 EYA1Q99502 592 aa29.54■■■□□ 2.32
CDX1-201ENST00000231656 AXIN2Q9Y2T1 843 aa29.54■■■□□ 2.32
CDX1-201ENST00000231656 COL22A1Q8NFW1 1626 aaPredicted RBP29.54■■■□□ 2.32
CDX1-201ENST00000231656 SULT6B1Q6IMI4 303 aa29.54■■■□□ 2.32
CDX1-201ENST00000231656 HAP1P54257 671 aaPredicted RBP29.53■■■□□ 2.32
CDX1-201ENST00000231656 IGSF1Q8N6C5 1336 aa29.53■■■□□ 2.32
CDX1-201ENST00000231656 AEBP1Q8IUX7 1158 aa29.52■■■□□ 2.32
CDX1-201ENST00000231656 MAPK8IP3Q9UPT6 1336 aa29.52■■■□□ 2.32
CDX1-201ENST00000231656 ABCC6O95255 1503 aa29.52■■■□□ 2.32
CDX1-201ENST00000231656 CCDC27Q2M243 656 aa29.52■■■□□ 2.32
CDX1-201ENST00000231656 RRP7AQ9Y3A4 280 aaKnown RBP29.5■■■□□ 2.31
CDX1-201ENST00000231656 CHRNA2Q15822 529 aa29.49■■■□□ 2.31
CDX1-201ENST00000231656 RGPD2P0DJD1 1756 aa29.49■■■□□ 2.31
CDX1-201ENST00000231656 KDRP35968 1356 aa29.49■■■□□ 2.31
CDX1-201ENST00000231656 ANKRD24Q8TF21 1146 aa29.48■■■□□ 2.31
CDX1-201ENST00000231656 NEUROD2Q15784 382 aa29.47■■■□□ 2.31
CDX1-201ENST00000231656 PHACTR3Q96KR7 559 aa29.47■■■□□ 2.31
CDX1-201ENST00000231656 NEFMP07197 916 aa29.47■■■□□ 2.31
CDX1-201ENST00000231656 PRDM11Q9NQV5 511 aa29.47■■■□□ 2.31
CDX1-201ENST00000231656 WDR63Q8IWG1 891 aa29.46■■■□□ 2.31
CDX1-201ENST00000231656 EXOC6Q8TAG9 804 aa29.46■■■□□ 2.31
CDX1-201ENST00000231656 ERBB3P21860 1342 aa29.45■■■□□ 2.31
CDX1-201ENST00000231656 TMPOP42166 694 aaKnown RBP29.45■■■□□ 2.31
CDX1-201ENST00000231656 PLIN1O60240 522 aa29.44■■■□□ 2.3
CDX1-201ENST00000231656 NBPF6Q5VWK0 638 aa29.44■■■□□ 2.3
CDX1-201ENST00000231656 NBPF4Q96M43 638 aa29.44■■■□□ 2.3
CDX1-201ENST00000231656 LMO7Q8WWI1 1683 aa29.43■■■□□ 2.3
CDX1-201ENST00000231656 CCDC136Q96JN2 1154 aa29.42■■■□□ 2.3
CDX1-201ENST00000231656 USHBP1Q8N6Y0 703 aa29.41■■■□□ 2.3
CDX1-201ENST00000231656 CAMTA1Q9Y6Y1 1673 aa29.4■■■□□ 2.3
CDX1-201ENST00000231656 NFE2L2Q16236 605 aa29.39■■■□□ 2.29
CDX1-201ENST00000231656 FAM83GA6ND36 823 aa29.38■■■□□ 2.29
CDX1-201ENST00000231656 RIPK4P57078 832 aa29.38■■■□□ 2.29
CDX1-201ENST00000231656 FAM208AQ9UK61 1670 aaKnown RBP29.38■■■□□ 2.29
CDX1-201ENST00000231656 NCAPD2Q15021 1401 aa29.38■■■□□ 2.29
CDX1-201ENST00000231656 DLG5Q8TDM6 1919 aa29.37■■■□□ 2.29
CDX1-201ENST00000231656 TRIM35Q9UPQ4 493 aa29.36■■■□□ 2.29
CDX1-201ENST00000231656 CRBNQ96SW2 442 aa29.34■■■□□ 2.29
CDX1-201ENST00000231656 CSB-PGBD3P0DP91 1061 aa29.34■■■□□ 2.29
CDX1-201ENST00000231656 COL14A1Q05707 1796 aaKnown RBP29.33■■■□□ 2.29
CDX1-201ENST00000231656 COL5A2P05997 1499 aaPredicted RBP29.33■■■□□ 2.29
CDX1-201ENST00000231656 C20orf194Q5TEA3 1177 aa29.33■■■□□ 2.29
CDX1-201ENST00000231656 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.33■■■□□ 2.29
CDX1-201ENST00000231656 NLRP2Q9NX02 1062 aa29.33■■■□□ 2.29
CDX1-201ENST00000231656 JCADQ9P266 1359 aa29.32■■■□□ 2.28
CDX1-201ENST00000231656 WDR17Q8IZU2 1322 aa29.3■■■□□ 2.28
CDX1-201ENST00000231656 MTHFSDQ2M296 383 aaKnown RBP29.29■■■□□ 2.28
CDX1-201ENST00000231656 MYH16Q9H6N6 1097 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms