RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-215	ENST00000558868	VN1R2	Q8NFZ6	395 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	ITFG1	Q8TB96	612 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	ING5	Q8WYH8	240 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	PTPRN2	Q92932	1015 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	ISG20	Q96AZ6	181 aa	Known RBP	13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	RMDN1	Q96DB5	314 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	LMLN	Q96KR4	655 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	ZSWIM3	Q96MP5	696 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	SRPK1	Q96SB4	655 aa	Known RBP	13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	PAIP2	Q9BPZ3	127 aa	Known RBP	13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	TDRD1	Q9BXT4	1180 aa	Known RBP	13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	PLK2	Q9NYY3	685 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	HACD3	Q9P035	362 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	RAI2	Q9Y5P3	530 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	ACTL7A	Q9Y615	435 aa		13.89	□□□□□ -0.19
TPM1-215	ENST00000558868	LAMA2	P24043	3122 aa	Known RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	NOTCH4	Q99466	2003 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	NEDD8-MDP1	E9PL57	170 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	GOLGA8R	I6L899	631 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	IGSF6	O95976	241 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	MPO	P05164	745 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	CD70	P32970	193 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	BMP8B	P34820	402 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	CRHR1	P34998	444 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	ARCN1	P48444	511 aa	Known RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	NUMB	P49757	651 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	NEK3	P51956	506 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	RPL26	P61254	145 aa	Known RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	MSLN	Q13421	630 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	NEPRO	Q6NW34	567 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	TMEM184A	Q6ZMB5	413 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	CPLX4	Q7Z7G2	160 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	C12orf76	Q8N812	135 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	TCP10L	Q8TDR4	215 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	STYX	Q8WUJ0	223 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	EXOC2	Q96KP1	924 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	ZNF778	Q96MU6	729 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	CCT8L2	Q96SF2	557 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	KLF6	Q99612	283 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	CEP44	Q9C0F1	390 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	RHOJ	Q9H4E5	214 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	OBP2A	Q9NY56	170 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	GDE1	Q9NZC3	331 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	GGA2	Q9UJY4	613 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	RPL26L1	Q9UNX3	145 aa	Known RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	CHKB	Q9Y259	395 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	FCF1	Q9Y324	198 aa	Known RBP	13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	PSAT1	Q9Y617	370 aa		13.88	□□□□□ -0.19
TPM1-215	ENST00000558868	HMX2	A2RU54	273 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	C2orf81	A6NN90	581 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	SOCS5	O75159	536 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	ADH1C	P00326	375 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	VIM	P08670	466 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	PABPC1	P11940	636 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	TYR	P14679	529 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	TYK2	P29597	1187 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	SEC24C	P53992	1094 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	WDR4	P57081	412 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	SNRPD1	P62314	119 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	PRAME	P78395	509 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	PPARD	Q03181	441 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	ACVR1	Q04771	509 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	BCL2L1	Q07817	233 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	GALNT3	Q14435	633 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	TAF1A	Q15573	450 aa	Predicted RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	INSC	Q1MX18	579 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	LY6G5C	Q5SRR4	150 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	RARS2	Q5T160	578 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	ARMC12	Q5T9G4	340 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	LVRN	Q6Q4G3	990 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	RGS9BP	Q6ZS82	235 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	GALNT7	Q86SF2	657 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	GPR149	Q86SP6	731 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	TRIM42	Q8IWZ5	723 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	ADGRG2	Q8IZP9	1017 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	AHI1	Q8N157	1196 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	NDUFAF2	Q8N183	169 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	RIN3	Q8TB24	985 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	GDAP1	Q8TB36	358 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	BLOC1S5	Q8TDH9	187 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	OSCP1	Q8WVF1	389 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	SCG3	Q8WXD2	468 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	SPOCK2	Q92563	424 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	SMARCD2	Q92925	531 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	ISL2	Q96A47	359 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	E2F7	Q96AV8	911 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	AGAP2	Q99490	1192 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	VPS11	Q9H270	941 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	MFSD1	Q9H3U5	465 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	NSUN3	Q9H649	340 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	IGFLR1	Q9H665	355 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	THG1L	Q9NWX6	298 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	DUS2	Q9NX74	493 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	SLC2A6	Q9UGQ3	507 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	DCDC2	Q9UHG0	476 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	GRID1	Q9ULK0	1009 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	HS3ST2	Q9Y278	367 aa		13.87	□□□□□ -0.19
TPM1-215	ENST00000558868	WNT6	Q9Y6F9	365 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms