RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 AGERQ15109 404 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 NFKBIBQ15653 356 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 SMTNL2Q2TAL5 461 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 LRRC73Q5JTD7 316 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 TPRG1LQ5T0D9 272 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 TXNRD3NBQ6F5E7 133 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 PARGQ86W56 976 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 CAMK1DQ8IU85 385 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 TP53INP2Q8IXH6 220 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 FAM71BQ8TC56 605 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 CXorf40AQ8TE69 158 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 ECHDC3Q96DC8 303 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 CSPG4P5Q96PW8 444 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 PSKH2Q96QS6 385 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 C1QTNF7Q9BXJ2 289 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 SP110Q9HB58 689 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 PCDH18Q9HCL0 1135 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.58■□□□□ 0.72
USP40-207ENST00000450940 ETNK2Q9NVF9 386 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 DKK4Q9UBT3 224 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 CFAP47Q6ZTR5 3102 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 MYO1FO00160 1098 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 DFFAO00273 331 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 RIOK3O14730 519 aaKnown RBP19.57■□□□□ 0.72
USP40-207ENST00000450940 PEX11BO96011 259 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 IGFALSP35858 605 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 ASTE1Q2TB18 679 aaPredicted RBP19.57■□□□□ 0.72
USP40-207ENST00000450940 CCDC157Q569K6 752 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 TMCO4Q5TGY1 634 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 TMCO3Q6UWJ1 677 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 ZSWIM9Q86XI8 627 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 PROSER1Q86XN7 944 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 TP53I13Q8NBR0 393 aaPredicted RBP19.57■□□□□ 0.72
USP40-207ENST00000450940 SPOCK2Q92563 424 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 HSPH1Q92598 858 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 BTBD6Q96KE9 485 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 DNAJC7Q99615 494 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 ATP13A3Q9H7F0 1226 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 CAAP1Q9H8G2 361 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 PCDH12Q9NPG4 1184 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 DNAJC28Q9NX36 388 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 NLGN3Q9NZ94 848 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 CSNK1G3Q9Y6M4 447 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 PKD1L2Q7Z442 2459 aa19.57■□□□□ 0.72
USP40-207ENST00000450940 DSPP15924 2871 aaKnown RBP19.56■□□□□ 0.72
USP40-207ENST00000450940 SHROOM3Q8TF72 1996 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 CFAP69A5D8W1 941 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 NEMP2A6NFY4 417 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 SCAMP1O15126 338 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 MUSKO15146 869 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 CBFA2T2O43439 604 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 XPAP23025 273 aaPredicted RBP19.56■□□□□ 0.72
USP40-207ENST00000450940 IL4RP24394 825 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 SERPINA4P29622 427 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 EIF4A3P38919 411 aaKnown RBP19.56■□□□□ 0.72
USP40-207ENST00000450940 RENBPP51606 427 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 PDE1CQ14123 709 aaPredicted RBP19.56■□□□□ 0.72
USP40-207ENST00000450940 ZNF542PQ5EBM4 170 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 SPECC1LQ69YQ0 1117 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 MARCH9Q86YJ5 346 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 CACTIN-AS1Q8N1I8 211 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 FAM181AQ8N9Y4 354 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 OR8K1Q8NGG5 319 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 RFFLQ8WZ73 363 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 WRAP53Q9BUR4 548 aaKnown RBP19.56■□□□□ 0.72
USP40-207ENST00000450940 CINPQ9BW66 212 aaPredicted RBP19.56■□□□□ 0.72
USP40-207ENST00000450940 RCOR3Q9P2K3 495 aaPredicted RBP19.56■□□□□ 0.72
USP40-207ENST00000450940 SEPT3Q9UH03 358 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 KLF15Q9UIH9 416 aa19.56■□□□□ 0.72
USP40-207ENST00000450940 MMP12P39900 470 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 ARSEP51690 589 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 SLC10A7Q0GE19 358 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 EIF2B5Q13144 721 aaKnown RBP19.55■□□□□ 0.72
USP40-207ENST00000450940 TRIM14Q14142 442 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 PTK2BQ14289 1009 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 LBRQ14739 615 aaKnown RBP19.55■□□□□ 0.72
USP40-207ENST00000450940 SLC18A3Q16572 532 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 KDM7AQ6ZMT4 941 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 PDCD7Q8N8D1 485 aaKnown RBP19.55■□□□□ 0.72
USP40-207ENST00000450940 NSMCE3Q96MG7 304 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 CCDC86Q9H6F5 360 aaKnown RBP19.55■□□□□ 0.72
USP40-207ENST00000450940 MBNL1Q9NR56 388 aaKnown RBP19.55■□□□□ 0.72
USP40-207ENST00000450940 UVRAGQ9P2Y5 699 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 ATP8A1Q9Y2Q0 1164 aa19.55■□□□□ 0.72
USP40-207ENST00000450940 SSU72P8A0A1W2PR75 194 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 FAM149AA5PLN7 773 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 TRABD2BA6NFA1 517 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 H3BM21 787 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 TRAFD1O14545 582 aaPredicted RBP19.54■□□□□ 0.72
USP40-207ENST00000450940 MAFKO60675 156 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 ALPPL2P10696 532 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 CKMT1AP12532 417 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 CR2P20023 1033 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 HSPA9P38646 679 aaKnown RBP19.54■□□□□ 0.72
USP40-207ENST00000450940 AP1S1P61966 158 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 BCL2L1Q07817 233 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 ERAP2Q6P179 960 aa19.54■□□□□ 0.72
USP40-207ENST00000450940 ZNF548Q8NEK5 533 aaPredicted RBP19.54■□□□□ 0.72
USP40-207ENST00000450940 ZNF564Q8TBZ8 553 aaPredicted RBP19.54■□□□□ 0.72
USP40-207ENST00000450940 TBATAQ96M53 351 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms