RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TRIM38O00635 465 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 SCAMP1O15126 338 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 RAD51BO15315 384 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 ATMINO43313 823 aaPredicted RBP19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 SIGLEC6O43699 453 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 CSF2P04141 144 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 PTMSP20962 102 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 MIPP30301 263 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 PCK1P35558 622 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 CSNK1DP48730 415 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 ELP6Q0PNE2 266 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 CYTH1Q15438 398 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 E4F1Q66K89 784 aaPredicted RBP19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 RFX8Q6ZV50 586 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 PARGQ86W56 976 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 LZTR1Q8N653 840 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 ARFGAP1Q8N6T3 406 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 CXorf40AQ8TE69 158 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 RFFLQ8WZ73 363 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 ZNF653Q96CK0 615 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 TUBGCP5Q96RT8 1024 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 SNRNP25Q9BV90 132 aaKnown RBP19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 PDFQ9HBH1 243 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 DNAJC28Q9NX36 388 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 LHX3Q9UBR4 397 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 PCSK1NQ9UHG2 260 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 CSNK1G3Q9Y6M4 447 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 ZFYVE26Q68DK2 2539 aa19.3■□□□□ 0.68
CCDC28A-203ENST00000617445 FAM149AA5PLN7 773 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 TM7SF2O76062 418 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 NME1P15531 152 aaKnown RBP19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 TIMP2P16035 220 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 XPAP23025 273 aaPredicted RBP19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 PFN3P60673 137 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 YPEL5P62699 121 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 FANCCQ00597 558 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 PTK2BQ14289 1009 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 FZD2Q14332 565 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 RFTN1Q14699 578 aaPredicted RBP19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 BOLA3Q53S33 107 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 AFMIDQ63HM1 303 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 BRAT1Q6PJG6 821 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 FAM181AQ8N9Y4 354 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 BTN2A2Q8WVV5 523 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 CENPTQ96BT3 561 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 SUV39H2Q9H5I1 410 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 ZWILCHQ9H900 591 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 CBX8Q9HC52 389 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 GPATCH2LQ9NWQ4 482 aa19.29■□□□□ 0.68
CCDC28A-203ENST00000617445 MYLKQ15746 1914 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 TSPAN11A1L157 253 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 SYCE3A1L190 88 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 SPINT1O43278 529 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 LRCH4O75427 683 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 CKMT1AP12532 417 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 SKILP12757 684 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 ERCC2P18074 760 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 PAPOLAP51003 745 aaKnown RBP19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 DUSP3P51452 185 aaPredicted RBP19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 UBASH3AP57075 661 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 DAB2P98082 770 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 NSUN2Q08J23 767 aaKnown RBP eCLIP19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 CA9Q16790 459 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 TMEM52BQ4KMG9 183 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 HES3Q5TGS1 186 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 MDM1Q8TC05 714 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 PEBP4Q96S96 227 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 KCTD15Q96SI1 283 aaPredicted RBP19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 SLC39A8Q9C0K1 460 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 UCKL1Q9NWZ5 548 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 NCKIPSDQ9NZQ3 722 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 GGT7Q9UJ14 662 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 ITM2BQ9Y287 266 aa19.28■□□□□ 0.68
CCDC28A-203ENST00000617445 GOLGA6L19H0YKK7 550 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 J3KR12 359 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 PALMO75781 387 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 PBX1P40424 430 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 THOP1P52888 689 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 ZBED6P86452 979 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 IL10RBQ08334 325 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 CYP4F3Q08477 520 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 PDE1CQ14123 709 aaPredicted RBP19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 PIGHQ14442 188 aaPredicted RBP19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 UGP2Q16851 508 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 TDRD12Q587J7 1177 aaKnown RBP19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 PPP6R3Q5H9R7 873 aaPredicted RBP19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 CFAP58Q5T655 872 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 TMCO4Q5TGY1 634 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 CYP4V2Q6ZWL3 525 aaPredicted RBP19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 NXPE2Q96DL1 559 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 CELF6Q96J87 481 aaKnown RBP19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 TBATAQ96M53 351 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 TRIM7Q9C029 511 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 NRSN2Q9GZP1 204 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 ATP13A3Q9H7F0 1226 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 MYO1AQ9UBC5 1043 aa19.27■□□□□ 0.68
CCDC28A-203ENST00000617445 TPP1O14773 563 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 INSIG1O15503 277 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 FFAR2O15552 330 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 MMP20O60882 483 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms