RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 HASPINQ8TF76 798 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 NOC3LQ8WTT2 800 aaKnown RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 NEIL1Q96FI4 390 aaPredicted RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 LRRC46Q96FV0 321 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 B3GALT6Q96L58 329 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 C16orf92Q96LL3 132 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 ZNF558Q96NG5 402 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 TSC22D3Q99576 134 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 PRPF18Q99633 342 aaKnown RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 CGREF1Q99674 301 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 LPIN3Q9BQK8 851 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 PAAF1Q9BRP4 392 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 NTPCRQ9BSD7 190 aaKnown RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 C11orf84Q9BUA3 381 aaPredicted RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 DDX23Q9BUQ8 820 aaKnown RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 STRA6Q9BX79 667 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 VN1R3Q9BXE9 311 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 FOXQ1Q9C009 403 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 POFUT1Q9H488 388 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 MAGEF1Q9HAY2 307 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 GOLGA2P5Q9HBQ8 144 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 TMEM165Q9HC07 324 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 OLFML3Q9NRN5 406 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 EXOC1Q9NV70 894 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 KCTD5Q9NXV2 234 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 DKK3Q9UBP4 350 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 CTNNAL1Q9UBT7 734 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 HOOK1Q9UJC3 728 aaKnown RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 DUSP12Q9UNI6 340 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 COG5Q9UP83 839 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 CLCA2Q9UQC9 943 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 ZNF148Q9UQR1 794 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 ITM2BQ9Y287 266 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 PCDHB1Q9Y5F3 818 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 PCDHA13Q9Y5I0 950 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 MTCH2Q9Y6C9 303 aa4.68□□□□□ -1.66
SF3B1-202ENST00000409915 EPN1Q9Y6I3 576 aaPredicted RBP4.68□□□□□ -1.66
SF3B1-202ENST00000409915 A0A0C4DFX4 3053 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 PLXNA4Q9HCM2 1894 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 MYO7AQ13402 2215 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ELOA3CA0A087WX78 387 aaPredicted RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 GOLGA6L7A0A1B0GV03 622 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 CCDC78A2IDD5 438 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 GOLGA8IPA6NC78 632 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ELOA3DA6NLF2 546 aaPredicted RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 GOLGA8JA6NMD2 632 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 AGAP14A8MT82 685 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ANKRD65E5RJM6 399 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 C5orf67F2Z3F1 127 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 H0YCG3 227 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 MAN2B1O00754 1011 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 CLIC2O15247 247 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 CLDN3O15551 220 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SIGLEC6O43699 453 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 FAM189A1O60320 539 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ACTL6BO94805 426 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 KIAA0754O94854 1291 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 TMCC1O94876 653 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ENDOD1O94919 500 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SYF2O95926 243 aaKnown RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 PIGRP01833 764 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 GALTP07902 379 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 NFICP08651 508 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 MCF2P10911 925 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 EPB41P11171 864 aaKnown RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ALADP13716 330 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ADSSP30520 456 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 OR1G1P47890 313 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ACOT2P49753 483 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 PNLIPRP1P54315 467 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SH3BGRP55822 239 aaPredicted RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ERVFC1P60507 584 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 RAC1P63000 192 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SOX4Q06945 474 aaPredicted RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 DSC1Q08554 894 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 LRRC74AQ0VAA2 488 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 KIF5AQ12840 1032 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 MRPL28Q13084 256 aaKnown RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 BYSLQ13895 437 aaKnown RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SPIDRQ14159 915 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 TRIM25Q14258 630 aaKnown RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 NR0B2Q15466 257 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 NAB2Q15742 525 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ELOA3BQ3SY89 546 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 TCEAL5Q5H9L2 206 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SPDYCQ5MJ68 293 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 FYB2Q5VWT5 728 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 PLPP4Q5VZY2 271 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ATG16L1Q676U5 607 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 CYB5D1Q6P9G0 228 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 DCLRE1AQ6PJP8 1040 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 ZPBP2Q6X784 338 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 C3orf62Q6ZUJ4 267 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 TMEM110Q86TL2 294 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 CDH24Q86UP0 819 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 CEP57Q86XR8 500 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SMYD4Q8IYR2 804 aaPredicted RBP4.67□□□□□ -1.66
SF3B1-202ENST00000409915 TBC1D21Q8IYX1 336 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 SYCP3Q8IZU3 236 aa4.67□□□□□ -1.66
SF3B1-202ENST00000409915 FMR1NBQ8N0W7 255 aaPredicted RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms