RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 NAIF1Q69YI7 327 aaPredicted RBP18.79■□□□□ 0.6
CLN3-206ENST00000360019 SRLQ86TD4 932 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CPA6Q8N4T0 437 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 OR6K2Q8NGY2 324 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CYB5D2Q8WUJ1 264 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 SORCS1Q8WY21 1168 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CCDC77Q9BR77 488 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CHRAC1Q9NRG0 131 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CTNNAL1Q9UBT7 734 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 SOX13Q9UN79 622 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 RPS6KL1Q9Y6S9 549 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 MYLKQ15746 1914 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 GOLGA6L10A6NI86 522 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 ARNTLO00327 626 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 PRLP01236 227 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 KCNA5P22460 613 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 STX2P32856 288 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 AP1S1P61966 158 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 TRAF2Q12933 501 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 HTR4Q13639 388 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 RALGPS1Q5JS13 557 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 C22orf39Q6P5X5 142 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 MTSS1LQ765P7 747 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 Q7L0L9 218 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 UNC5BQ8IZJ1 945 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 WFIKKN2Q8TEU8 576 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 VOPP1Q96AW1 172 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 ISG20Q96AZ6 181 aaKnown RBP18.79■□□□□ 0.6
CLN3-206ENST00000360019 CHFRQ96EP1 664 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 MRGPRX3Q96LB0 322 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 ZNF778Q96MU6 729 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 FCRL3Q96P31 734 aaPredicted RBP18.79■□□□□ 0.6
CLN3-206ENST00000360019 TRMT61BQ9BVS5 477 aaKnown RBP18.79■□□□□ 0.6
CLN3-206ENST00000360019 KIFC1Q9BW19 673 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CENPHQ9H3R5 247 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 ERVW-1Q9UQF0 538 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CHKBQ9Y259 395 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 RAI2Q9Y5P3 530 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 FAM237BA0A1B0GVD1 139 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 MAGEB16A2A368 324 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 RNF40O75150 1001 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 ALDH1A2O94788 518 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 POLBP06746 335 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 IVLP07476 585 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 HLA-DPA1P20036 260 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 PRKCHP24723 683 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 OAS2P29728 719 aaKnown RBP18.78■□□□□ 0.6
CLN3-206ENST00000360019 GJA4P35212 333 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 CSNK1DP48730 415 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 KLHL38Q2WGJ6 581 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 KBTBD12Q3ZCT8 623 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 PCID2Q5JVF3 399 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 PRPF38BQ5VTL8 546 aaKnown RBP18.78■□□□□ 0.6
CLN3-206ENST00000360019 KRT222Q8N1A0 295 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 PHTF2Q8N3S3 785 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 OR2AP1Q8NGE2 309 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 NXPE3Q969Y0 559 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 MFSD3Q96ES6 412 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 MYO19Q96H55 970 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 CYTH2Q99418 400 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 CIPCQ9C0C6 399 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 UBE2ZQ9H832 354 aaPredicted RBP18.78■□□□□ 0.6
CLN3-206ENST00000360019 SMYD2Q9NRG4 433 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 EURLQ9NYK6 297 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 MOCS1Q9NZB8 636 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 OGFRQ9NZT2 677 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 DEC1Q9P2X7 70 aa18.78■□□□□ 0.6
CLN3-206ENST00000360019 EVLQ9UI08 416 aaPredicted RBP18.78■□□□□ 0.6
CLN3-206ENST00000360019 ZCWPW2A0A1B0GU75 182 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 PRRT4C9JH25 899 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 GOLGA8KD6RF30 607 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 ANHXE9PGG2 379 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 POC1B-GALNT4F8VUJ3 575 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 USP1O94782 785 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 NDST3O95803 873 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 FGF1P05230 155 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 PDHA1P08559 390 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 GKP32189 559 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 OPRD1P41143 372 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 NR1H3Q13133 447 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 DLG2Q15700 870 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 PTPRNQ16849 979 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 ANKRD20A4Q4UJ75 823 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 KCTD16Q68DU8 428 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 GRAMD4Q6IC98 578 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 ZNF669Q96BR6 464 aaPredicted RBP18.77■□□□□ 0.6
CLN3-206ENST00000360019 CDX2Q99626 313 aaPredicted RBP18.77■□□□□ 0.6
CLN3-206ENST00000360019 CEP44Q9C0F1 390 aa18.77■□□□□ 0.6
CLN3-206ENST00000360019 ARIH1Q9Y4X5 557 aaPredicted RBP18.77■□□□□ 0.6
CLN3-206ENST00000360019 CCDC78A2IDD5 438 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 CXorf49A8MYA2 514 aaPredicted RBP18.77■□□□□ 0.59
CLN3-206ENST00000360019 IGSF6O95976 241 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 PRKCGP05129 697 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 NMBRP28336 390 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 KDSRQ06136 332 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 ACCSLQ4AC99 568 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 SPANXN3Q5MJ09 141 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 PKN3Q6P5Z2 889 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 CYS1Q717R9 158 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 CROCCP2Q86T23 111 aa18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms