RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 MYLK3Q32MK0 819 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 ZNF805Q5CZA5 627 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 PIP5KL1Q5T9C9 394 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 TCEAL6Q6IPX3 200 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 NEK5Q6P3R8 708 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 GDPD4Q6W3E5 623 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 ADAT2Q7Z6V5 191 aaKnown RBP13.17□□□□□ -0.3
CLK3-224ENST00000568605 PRPF39Q86UA1 669 aaKnown RBP13.17□□□□□ -0.3
CLK3-224ENST00000568605 TRIM69Q86WT6 500 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 CCDC50Q8IVM0 306 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 TPCN2Q8NHX9 752 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 PCDH19Q8TAB3 1148 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 RAPGEF5Q92565 580 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 TCEAL3Q969E4 200 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 ARRDC3Q96B67 414 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 SKA1Q96BD8 255 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 RBM41Q96IZ5 413 aaKnown RBP13.17□□□□□ -0.3
CLK3-224ENST00000568605 RNF157Q96PX1 679 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 PSKH2Q96QS6 385 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 TUBGCP5Q96RT8 1024 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 CPEB1Q9BZB8 566 aaKnown RBP13.17□□□□□ -0.3
CLK3-224ENST00000568605 SMOC1Q9H4F8 434 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 ATP13A3Q9H7F0 1226 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 TMEM74BQ9NUR3 256 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 REXO2Q9Y3B8 237 aaKnown RBP13.17□□□□□ -0.3
CLK3-224ENST00000568605 ALG6Q9Y672 507 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 LRP4O75096 1905 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.16□□□□□ -0.3
CLK3-224ENST00000568605 A0A1W2PPC4 97 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 PATE3B3GLJ2 98 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 PLK4O00444 970 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 PPP1R12AO14974 1030 aaPredicted RBP13.16□□□□□ -0.3
CLK3-224ENST00000568605 IGHV4-34P06331 123 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 XPAP23025 273 aaPredicted RBP13.16□□□□□ -0.3
CLK3-224ENST00000568605 NFKBIAP25963 317 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 MAOBP27338 520 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 MMP13P45452 471 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 GRIA4P48058 902 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 SUOXP51687 545 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 METAP1P53582 386 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 LIMK1P53667 647 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 NSUN2Q08J23 767 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLK3-224ENST00000568605 CYTH1Q15438 398 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 SLC45A4Q5BKX6 768 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 RALGPS1Q5JS13 557 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 MARC1Q5VT66 337 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 KIAA1161Q6NSJ0 714 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 ARHGAP36Q6ZRI8 547 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 PARS2Q7L3T8 475 aaKnown RBP13.16□□□□□ -0.3
CLK3-224ENST00000568605 RFX6Q8HWS3 928 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 KATNAL2Q8IYT4 538 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 NETO2Q8NC67 525 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 KIAA1524Q8TCG1 905 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 HDAC11Q96DB2 347 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 ZNF641Q96N77 438 aaPredicted RBP13.16□□□□□ -0.3
CLK3-224ENST00000568605 DESI2Q9BSY9 194 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 ZDHHC5Q9C0B5 715 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 TMEM9BQ9NQ34 198 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 TFR2Q9UP52 801 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 DMTF1Q9Y222 760 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 HYOU1Q9Y4L1 999 aa13.16□□□□□ -0.3
CLK3-224ENST00000568605 SCN8AQ9UQD0 1980 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.15□□□□□ -0.3
CLK3-224ENST00000568605 MACROD2A1Z1Q3 448 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 CCDC66A2RUB6 948 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 RCCD1A6NED2 376 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 C16orf96A6NNT2 1141 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 NEMP1O14524 444 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 LATO43561 262 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 AP1G1O43747 822 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 KRT86O43790 486 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 MAFKO60675 156 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 PCDH8O95206 1070 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 ENGP17813 658 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 CCNCP24863 283 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 CTNNA1P35221 906 aaKnown RBP13.15□□□□□ -0.3
CLK3-224ENST00000568605 CETN2P41208 172 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 RACK1P63244 317 aaKnown RBP13.15□□□□□ -0.3
CLK3-224ENST00000568605 ELP6Q0PNE2 266 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 HNRNPDQ14103 355 aaKnown RBP13.15□□□□□ -0.3
CLK3-224ENST00000568605 SLC9A4Q6AI14 798 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 BRAT1Q6PJG6 821 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 IL27RAQ6UWB1 636 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 BZW1Q7L1Q6 419 aaKnown RBP13.15□□□□□ -0.3
CLK3-224ENST00000568605 SRLQ86TD4 932 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 TSEN2Q8NCE0 465 aaKnown RBP13.15□□□□□ -0.3
CLK3-224ENST00000568605 HCAR2Q8TDS4 363 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 FATE1Q969F0 183 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 RNF25Q96BH1 459 aaPredicted RBP13.15□□□□□ -0.3
CLK3-224ENST00000568605 KLHL32Q96NJ5 620 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 GOLPH3Q9H4A6 298 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 CAPN10Q9HC96 672 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 DKK3Q9UBP4 350 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 AMACRQ9UHK6 382 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 CFAP54Q96N23 3096 aa13.15□□□□□ -0.3
CLK3-224ENST00000568605 A0A1W2PQ67 120 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 ARHGAP33O14559 1287 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 TSPAN6O43657 245 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 MAGEC1O60732 1142 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 RNGTTO60942 597 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms