RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TPP1O14773 563 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 ZNF202O95125 648 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 GJB6O95452 261 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 SRCP12931 536 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 NEK3P51956 506 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 INHBCP55103 352 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 CDH4P55283 916 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 SNX16P57768 344 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 SKOR1P84550 965 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 CENPCQ03188 943 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 SGCGQ13326 291 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 AUHQ13825 339 aaKnown RBP17.31■□□□□ 0.36
VPS29-204ENST00000548259 CCDC40Q4G0X9 1142 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 COBLL1Q53SF7 1204 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 EFHC1Q5JVL4 640 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 ZNF658Q5TYW1 1059 aaPredicted RBP17.31■□□□□ 0.36
VPS29-204ENST00000548259 ANKRD40Q6AI12 368 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 OR6B2Q6IFH4 312 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 RRAGAQ7L523 313 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 TMEM110Q86TL2 294 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 OR2A12Q8NGT7 310 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 NOX5Q96PH1 765 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.31■□□□□ 0.36
VPS29-204ENST00000548259 COX16Q9P0S2 106 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 IL36AQ9UHA7 158 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 TBC1D30Q9Y2I9 924 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 ENTPD2Q9Y5L3 495 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 OR51B4Q9Y5P0 310 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 U3KQA8 63 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 PIEZO2Q9H5I5 2752 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 CCDC187A0A096LP49 1063 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 CDRT15L2A8MXV6 281 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 PYCARD-AS1I3L0S3 204 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 TNFSF15O95150 251 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 SMC2O95347 1197 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 CTSLP07711 333 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 RHOCP08134 193 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 ITGA2BP08514 1039 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 SFTPCP11686 197 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 NFATC3Q12968 1075 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 FZD2Q14332 565 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 ARL13BQ3SXY8 428 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 TMEM259Q4ZIN3 620 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 SEL1L3Q68CR1 1132 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 DENND1BQ6P3S1 775 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 GUSBP11Q6P575 273 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 CLEC14AQ86T13 490 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 GRIN3AQ8TCU5 1115 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 LMX1AQ8TE12 382 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 KAT5Q92993 513 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 ARRDC3Q96B67 414 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 CEP63Q96MT8 703 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 GSDMAQ96QA5 445 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 SCAND2PQ9GZW5 306 aaPredicted RBP17.3■□□□□ 0.36
VPS29-204ENST00000548259 SPASTQ9UBP0 616 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 IL17BQ9UHF5 180 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 ZFR2Q9UPR6 939 aaKnown RBP17.3■□□□□ 0.36
VPS29-204ENST00000548259 ATP6V1DQ9Y5K8 247 aa17.3■□□□□ 0.36
VPS29-204ENST00000548259 TMX2-CTNND1H3BSU7 103 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 PSMA7O14818 248 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 HSF2BPO75031 334 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 LETM1O95202 739 aaPredicted RBP17.29■□□□□ 0.36
VPS29-204ENST00000548259 PAK4O96013 591 aaPredicted RBP17.29■□□□□ 0.36
VPS29-204ENST00000548259 CENPBP07199 599 aaPredicted RBP17.29■□□□□ 0.36
VPS29-204ENST00000548259 JUNDP17535 347 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 EIF3IQ13347 325 aaKnown RBP17.29■□□□□ 0.36
VPS29-204ENST00000548259 EIF4EBP2Q13542 120 aaPredicted RBP17.29■□□□□ 0.36
VPS29-204ENST00000548259 SPIDRQ14159 915 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 PTK2BQ14289 1009 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 ARSIQ5FYB1 569 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 USP53Q70EK8 1073 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 DCAF4L2Q8NA75 395 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 ASNSD1Q9NWL6 643 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 ATXN7L1Q9ULK2 861 aaPredicted RBP17.29■□□□□ 0.36
VPS29-204ENST00000548259 PAXBP1Q9Y5B6 917 aa17.29■□□□□ 0.36
VPS29-204ENST00000548259 MUSKO15146 869 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 THAP12O43422 761 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 CALCAP01258 141 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 NME3Q13232 169 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 CLN3Q13286 438 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 PKP1Q13835 747 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 PDE1CQ14123 709 aaPredicted RBP17.28■□□□□ 0.36
VPS29-204ENST00000548259 DEFB133Q30KQ1 61 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 C6orf132Q5T0Z8 1188 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 ACBD5Q5T8D3 534 aaPredicted RBP17.28■□□□□ 0.36
VPS29-204ENST00000548259 RETSATQ6NUM9 610 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 ESRP1Q6NXG1 681 aaKnown RBP17.28■□□□□ 0.36
VPS29-204ENST00000548259 LRRC31Q6UY01 552 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 ATG14Q6ZNE5 492 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 SETD3Q86TU7 594 aaPredicted RBP17.28■□□□□ 0.36
VPS29-204ENST00000548259 DEFB106AQ8N104 65 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 BMFQ96LC9 184 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 STRADBQ9C0K7 418 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 SIK2Q9H0K1 926 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 SYNDIG1Q9H7V2 258 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 GPR27Q9NS67 375 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 TMEM51Q9NW97 253 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 VPS51Q9UID3 782 aa17.28■□□□□ 0.36
VPS29-204ENST00000548259 HOOK1Q9UJC3 728 aaKnown RBP17.28■□□□□ 0.36
VPS29-204ENST00000548259 HS3ST4Q9Y661 456 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms