RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PSMG1O95456 288 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 ATP5BP06576 529 aaKnown RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 CETPP11597 493 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 GNALP38405 381 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 GDF10P55107 478 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 CSNK2BP67870 215 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 CLVS2Q5SYC1 327 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 RARS2Q5T160 578 aaKnown RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 NRBF2Q96F24 287 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 L3MBTL3Q96JM7 780 aaPredicted RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 YME1L1Q96TA2 773 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 HEPHQ9BQS7 1158 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 B3GNT4Q9C0J1 378 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 ASCC2Q9H1I8 757 aaPredicted RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 THEGQ9P2T0 379 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 MYH4Q9Y623 1939 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 CCDC78A2IDD5 438 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SH3D21A4FU49 640 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 RAD51BO15315 384 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 YKT6O15498 198 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SERPINE1P05121 402 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 RARBP10826 455 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 L1CAMP32004 1257 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SLC1A6P48664 564 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 LAPTM5Q13571 262 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 DGKDQ16760 1214 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 C15orf39Q6ZRI6 1047 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 RAB44Q7Z6P3 723 aaPredicted RBP10.59□□□□□ -0.71
LIG1-220ENST00000601091 DEFB132Q7Z7B7 95 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SLC38A6Q8IZM9 456 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SLC4A11Q8NBS3 891 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 GPRC5AQ8NFJ5 357 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 TMEM174Q8WUU8 243 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 TRAPPC9Q96Q05 1148 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 EBNA1BP2Q99848 306 aaKnown RBP10.59□□□□□ -0.71
LIG1-220ENST00000601091 ARL8BQ9NVJ2 186 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 ADA2Q9NZK5 511 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 KLK14Q9P0G3 267 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SLC39A10Q9ULF5 831 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 GIT1Q9Y2X7 761 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 PSMD3O43242 534 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 MAP3K13O43283 966 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 ZBTB11O95625 1053 aaPredicted RBP10.59□□□□□ -0.71
LIG1-220ENST00000601091 CDK4P11802 303 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 GP5P40197 560 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SH3D19Q5HYK7 790 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 FBXO47Q5MNV8 452 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 RFWD3Q6PCD5 774 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 TAS1R3Q7RTX0 852 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 C1orf127Q8N9H9 656 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 COPS5Q92905 334 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SYT15Q9BQS2 421 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 GPATCH1Q9BRR8 931 aaKnown RBP10.59□□□□□ -0.71
LIG1-220ENST00000601091 ZNF670Q9BS34 389 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SNTG2Q9NY99 539 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 ZNF212Q9UDV6 495 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 COL4A1P02462 1669 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 RAB19A4D1S5 217 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 PRR23AA6NEV1 266 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 GSC2O15499 205 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 MSCO60682 206 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 CILPO75339 1184 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 TGDSO95455 350 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 ITGA2BP08514 1039 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 ATP6V1C1P21283 382 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 PTPN7P35236 360 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SP2Q02086 613 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 KRT80Q6KB66 452 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 LBX2Q6XYB7 198 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIG1-220ENST00000601091 KIAA2013Q8IYS2 634 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 PLD5Q8N7P1 536 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 C12orf29Q8N999 325 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 NAT8LQ8N9F0 302 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 BANPQ8N9N5 519 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 PIWIL2Q8TC59 973 aaKnown RBP10.59□□□□□ -0.71
LIG1-220ENST00000601091 KCTD4Q8WVF5 259 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 HERPUD2Q9BSE4 406 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 GIMAP4Q9NUV9 329 aa10.59□□□□□ -0.71
LIG1-220ENST00000601091 ARHGEF37A1IGU5 675 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 SP100P23497 879 aaPredicted RBP10.58□□□□□ -0.71
LIG1-220ENST00000601091 MGAT1P26572 445 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 OGDHQ02218 1023 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 ITGA9Q13797 1035 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 VGLL4Q14135 290 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 NAPEPLDQ6IQ20 393 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 C16orf46Q6P387 395 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 STRA8Q7Z7C7 330 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 LURAP1LQ8IV03 231 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 CMASQ8NFW8 434 aaPredicted RBP10.58□□□□□ -0.71
LIG1-220ENST00000601091 C12orf42Q96LP6 360 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 MOGAT1Q96PD6 335 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 ELOVL4Q9GZR5 314 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 UPF3AQ9H1J1 476 aaKnown RBP10.58□□□□□ -0.71
LIG1-220ENST00000601091 DENND2DQ9H6A0 471 aaPredicted RBP10.58□□□□□ -0.71
LIG1-220ENST00000601091 NSMCE4AQ9NXX6 385 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 SORCS3Q9UPU3 1222 aa10.58□□□□□ -0.71
LIG1-220ENST00000601091 PTPRJQ12913 1337 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 HACD1B0YJ81 288 aa10.58□□□□□ -0.72
LIG1-220ENST00000601091 CXCL11O14625 94 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms