RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 MRPS25P82663 173 aaKnown RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 NHLH1Q02575 133 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SULT2A1Q06520 285 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 MRPL28Q13084 256 aaKnown RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 BYSLQ13895 437 aaKnown RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 DAG1Q14118 895 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 COG2Q14746 738 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 TNIP1Q15025 636 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 C3orf38Q5JPI3 329 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 CCDC183Q5T5S1 534 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 BEND5Q7L4P6 421 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 MAVSQ7Z434 540 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 PHLDB2Q86SQ0 1253 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 CAND1Q86VP6 1230 aaKnown RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 COL23A1Q86Y22 540 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 ZNF280BQ86YH2 543 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 LSMEM2Q8N112 164 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 ARHGAP18Q8N392 663 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 OR56A3Q8NH54 315 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SVIPQ8NHG7 77 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 GSDMBQ8TAX9 411 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 GDAP1Q8TB36 358 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 AFAP1L1Q8TED9 768 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 ZNF384Q8TF68 577 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 ZFPM2Q8WW38 1151 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SKA1Q96BD8 255 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SNF8Q96H20 258 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SNX27Q96L92 541 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SNX22Q96L94 193 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 UQCC2Q9BRT2 126 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 NAT10Q9H0A0 1025 aaKnown RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 NSRP1Q9H0G5 558 aaKnown RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 DMAP1Q9NPF5 467 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SNX15Q9NRS6 342 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 ASB6Q9NWX5 421 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 AATFQ9NY61 560 aaKnown RBP eCLIP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 COL20A1Q9P218 1284 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 VPS18Q9P253 973 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 ARPP21Q9UBL0 812 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 TTC7AQ9ULT0 858 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 PYCARDQ9ULZ3 195 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 SCAF8Q9UPN6 1271 aaKnown RBP4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 TRAF3IP3Q9Y228 551 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 PCDHGB6Q9Y5F9 930 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 TTC41PQ6P2S7 1318 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 PHLPP2Q6ZVD8 1323 aa4.9□□□□□ -1.63
HMGB3P13-201ENST00000511263 USP6P35125 1406 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 ASXL1Q8IXJ9 1541 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 LRRC7Q96NW7 1537 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 TULP4Q9NRJ4 1543 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 ANO9A1A5B4 782 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 GTPBP10A4D1E9 387 aaKnown RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 TMEM247A6NEH6 219 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 VWC2LB2RUY7 222 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 E9PMD0 336 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 IDH3BO43837 385 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 PFDN1O60925 122 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 FLOT1O75955 427 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 YEATS4O95619 227 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 ATP5DP30049 168 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 HSPA4P34932 840 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 HOXD12P35452 270 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 PTDSS1P48651 473 aaKnown RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 KIF5AQ12840 1032 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 PICALMQ13492 652 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 BLMHQ13867 455 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 NDUFA5Q16718 116 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 CCDC142Q17RM4 750 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 RABL6Q3YEC7 729 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 CERKLQ49MI3 558 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 PLEKHO1Q53GL0 409 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 SPATA1Q5VX52 437 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 FCRLBQ6BAA4 426 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 USP17L6PQ6QN14 398 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 CCBE1Q6UXH8 406 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 BZW1Q7L1Q6 419 aaKnown RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 FAM186BQ8IYM0 893 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 ESX1Q8N693 406 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 CNNM3Q8NE01 707 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 TNIP2Q8NFZ5 429 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 BRSK1Q8TDC3 778 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 HASPINQ8TF76 798 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 NTN5Q8WTR8 489 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 R3HDM4Q96D70 268 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 ERP27Q96DN0 273 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 DAZAP1Q96EP5 407 aaKnown RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 CFAP36Q96G28 342 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 ABHD8Q96I13 439 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 VPS50Q96JG6 964 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 XPO4Q9C0E2 1151 aaKnown RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 YIPF3Q9GZM5 350 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 DRC3Q9H069 523 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 SIL1Q9H173 461 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 CHST8Q9H2A9 424 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 VCXQ9H320 206 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 GOLPH3LQ9H4A5 285 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 VCPKMTQ9H867 229 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 CLK4Q9HAZ1 481 aaKnown RBP4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 DUSP22Q9NRW4 184 aa4.89□□□□□ -1.63
HMGB3P13-201ENST00000511263 STK32BQ9NY57 414 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms