RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MPP6Q9NZW5 540 aa19.58■□□□□ 0.73
USP48-201ENST00000308271 SYNCRIPO60506 623 aaKnown RBP19.58■□□□□ 0.73
USP48-201ENST00000308271 LINGO3P0C6S8 592 aa19.58■□□□□ 0.73
USP48-201ENST00000308271 YBX3P16989 372 aaKnown RBP eCLIP19.58■□□□□ 0.733e-7■□□□□ 10.8
USP48-201ENST00000308271 SLC41A1Q8IVJ1 513 aa19.58■□□□□ 0.73
USP48-201ENST00000308271 ZNF276Q8N554 614 aa19.58■□□□□ 0.73
USP48-201ENST00000308271 PCDHGC3Q9UN70 934 aa19.58■□□□□ 0.73
USP48-201ENST00000308271 RPL26P61254 145 aaKnown RBP19.58■□□□□ 0.72
USP48-201ENST00000308271 EN1Q05925 392 aaPredicted RBP19.58■□□□□ 0.72
USP48-201ENST00000308271 HSFY1Q96LI6 401 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 NPAS2Q99743 824 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 SDCBP2Q9H190 292 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 KDM4FA0A1W2PPD8 638 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 PLA2G6O60733 806 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 FAM20BO75063 409 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 ZNF682O95780 498 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 HMBSP08397 361 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 DDX5P17844 614 aaKnown RBP19.58■□□□□ 0.72
USP48-201ENST00000308271 SLC7A2P52569 658 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 ARMC3Q5W041 872 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 HERC6Q8IVU3 1022 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 ATP6V0D2Q8N8Y2 350 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 SLC2A14Q8TDB8 520 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 S100ZQ8WXG8 99 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 WNT8BQ93098 351 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 LGMNQ99538 433 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 NT5MQ9NPB1 228 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 PDGFCQ9NRA1 345 aa19.58■□□□□ 0.72
USP48-201ENST00000308271 C5orf58C9J3I9 102 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 CAPSQ13938 189 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 POLD3Q15054 466 aaPredicted RBP19.57■□□□□ 0.72
USP48-201ENST00000308271 HEATR4Q86WZ0 1026 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 CPXM1Q96SM3 734 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 OSBPL6Q9BZF3 934 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 SETD4Q9NVD3 440 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 UTP6Q9NYH9 597 aaKnown RBP19.57■□□□□ 0.72
USP48-201ENST00000308271 MYPNQ86TC9 1320 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 MPSTP25325 297 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 SNX31Q8N9S9 440 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 FAXDC2Q96IV6 333 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 ZFYVE19Q96K21 471 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 ACO2Q99798 780 aaKnown RBP19.57■□□□□ 0.72
USP48-201ENST00000308271 NOL11Q9H8H0 719 aaKnown RBP19.57■□□□□ 0.72
USP48-201ENST00000308271 CRTAMO95727 393 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 CPB1P15086 417 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 CCR1P32246 355 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 CCNFP41002 786 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 RENBPP51606 427 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 SPIRE1Q08AE8 756 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 SPRED3Q2MJR0 410 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 BBS7Q8IWZ6 715 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 NAT8LQ8N9F0 302 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 DCAKDQ8WVC6 231 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 CIB1Q99828 191 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 GPR63Q9BZJ6 419 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 HPS4Q9NQG7 708 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 TNFSF13BQ9Y275 285 aa19.57■□□□□ 0.72
USP48-201ENST00000308271 PDZK1P1A8MUH7 402 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 TMEM63AO94886 807 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ERBB2P04626 1255 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 IDH3AP50213 366 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 MPP2Q14168 576 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 VWA5B1Q5TIE3 1220 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 MARC1Q5VT66 337 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ILDR2Q71H61 639 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ACTRT2Q8TDY3 377 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 COX4I2Q96KJ9 171 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 PCDHB12Q9Y5F1 795 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 NRP2O60462 931 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 MAPK1P28482 360 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 TRAF3Q13114 568 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ADGRE1Q14246 886 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 TTLL9Q3SXZ7 439 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 MTX3Q5HYI7 312 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 XYLT1Q86Y38 959 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 OR56A4Q8NGH8 313 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 C6orf62Q9GZU0 229 aaPredicted RBP19.56■□□□□ 0.72
USP48-201ENST00000308271 POPDC2Q9HBU9 364 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 DYNC1LI2O43237 492 aaPredicted RBP19.56■□□□□ 0.72
USP48-201ENST00000308271 LHX1P48742 406 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ZNF846Q147U1 533 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ARMC4Q5T2S8 1044 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 FKBP1CQ5VVH2 108 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 EGFL6Q8IUX8 553 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 OR8H2Q8N162 312 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 OMDQ99983 421 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 DPY30Q9C005 99 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 CNGB3Q9NQW8 809 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ARHGAP28Q9P2N2 729 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 PPM1HQ9ULR3 514 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 NFICP08651 508 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 RPS12P25398 132 aaKnown RBP19.56■□□□□ 0.72
USP48-201ENST00000308271 RAB15P59190 212 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 TWF1Q12792 350 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 PERM1Q5SV97 790 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 ADHFE1Q8IWW8 467 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 DCP1BQ8IZD4 617 aaKnown RBP19.56■□□□□ 0.72
USP48-201ENST00000308271 TRIM63Q969Q1 353 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 C1orf21Q9H246 121 aa19.56■□□□□ 0.72
USP48-201ENST00000308271 RHOJQ9H4E5 214 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms