RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ZSCAN5CA6NGD5 496 aaPredicted RBP26.36■■□□□ 1.81
TRIM28-204ENST00000594806 BTNL10A8MVZ5 291 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 GOT1P17174 413 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 NDST2P52849 883 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 ZBTB16Q05516 673 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 PDK2Q15119 407 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 MAP7D3Q8IWC1 876 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 PRCCQ92733 491 aaPredicted RBP26.36■■□□□ 1.81
TRIM28-204ENST00000594806 FAM122AQ96E09 287 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 SPACA7Q96KW9 195 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 PRDM16Q9HAZ2 1276 aa26.36■■□□□ 1.81
TRIM28-204ENST00000594806 TTC34A8MYJ7 566 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 CBX4O00257 560 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 SNAP91O60641 907 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 ZMPSTE24O75844 475 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 ERCC2P18074 760 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 STK19P49842 368 aaPredicted RBP26.35■■□□□ 1.81
TRIM28-204ENST00000594806 VAV2P52735 878 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 COPAP53621 1224 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 DPYSQ14117 519 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 SIM2Q14190 667 aaPredicted RBP26.35■■□□□ 1.81
TRIM28-204ENST00000594806 KRT81Q14533 505 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 LRRC38Q5VT99 294 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 TXNRD3NBQ6F5E7 133 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 FRS2Q8WU20 508 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 SIPA1Q96FS4 1042 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 TPSD1Q9BZJ3 242 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 MKRN2Q9H000 416 aaKnown RBP26.35■■□□□ 1.81
TRIM28-204ENST00000594806 PCDH18Q9HCL0 1135 aa26.35■■□□□ 1.81
TRIM28-204ENST00000594806 TMEM110-MUSTN1A8MSY1 372 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 KDELR3O43731 214 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 RNASEH1O60930 286 aaKnown RBP26.34■■□□□ 1.81
TRIM28-204ENST00000594806 LMNAP02545 664 aaKnown RBP26.34■■□□□ 1.81
TRIM28-204ENST00000594806 SRCP12931 536 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 P2RY2P41231 377 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 MRE11P49959 708 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 CDH6P55285 790 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 DLG2Q15700 870 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 ACCSLQ4AC99 568 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 C9orf64Q5T6V5 341 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 CEP68Q76N32 757 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 ZNF366Q8N895 744 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 ATP11CQ8NB49 1132 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 PTPRN2Q92932 1015 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 RSPH9Q9H1X1 276 aaPredicted RBP26.34■■□□□ 1.81
TRIM28-204ENST00000594806 NOL6Q9H6R4 1146 aaKnown RBP26.34■■□□□ 1.81
TRIM28-204ENST00000594806 RAB23Q9ULC3 237 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 SCML1Q9UN30 329 aa26.34■■□□□ 1.81
TRIM28-204ENST00000594806 PJA2O43164 708 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 SIN3BO75182 1162 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 ACVRL1P37023 503 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 PLA2G5P39877 138 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 TAS2R40P59535 323 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 SFSWAPQ12872 951 aaKnown RBP26.33■■□□□ 1.81
TRIM28-204ENST00000594806 ELAVL3Q14576 367 aaKnown RBP26.33■■□□□ 1.81
TRIM28-204ENST00000594806 KIAA1328Q86T90 577 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 KCTD6Q8NC69 237 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 CASKIN2Q8WXE0 1202 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 TSC1Q92574 1164 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 CCDC114Q96M63 670 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 CSPG4P5Q96PW8 444 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 CEP44Q9C0F1 390 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 LRRC19Q9H756 370 aa26.33■■□□□ 1.81
TRIM28-204ENST00000594806 REXO2Q9Y3B8 237 aaKnown RBP26.33■■□□□ 1.81
TRIM28-204ENST00000594806 ARHGAP42A6NI28 874 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 RASA4BC9J798 803 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ALOX15BO15296 676 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 RASA4O43374 803 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 NRDCO43847 1150 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ACADMP11310 421 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 SERPINH1P50454 418 aaKnown RBP26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ARSEP51690 589 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ARF5P84085 180 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 MAP7D1Q3KQU3 841 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ZNF776Q68DI1 518 aaPredicted RBP26.32■■□□□ 1.8
TRIM28-204ENST00000594806 KIAA1324Q6UXG2 1013 aaKnown RBP26.32■■□□□ 1.8
TRIM28-204ENST00000594806 VSIG1Q86XK7 387 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 SUMF1Q8NBK3 374 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ZC3H10Q96K80 434 aaKnown RBP26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ZNF670Q9BS34 389 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ITM2CQ9NQX7 267 aa26.32■■□□□ 1.8
TRIM28-204ENST00000594806 FARP1Q9Y4F1 1045 aaPredicted RBP26.32■■□□□ 1.8
TRIM28-204ENST00000594806 ARHGAP6O43182 974 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 MT-CO1P00395 513 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 GLDCP23378 1020 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 NUMBP49757 651 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 SERINC3Q13530 473 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 AFMIDQ63HM1 303 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 C11orf63Q6NUN7 778 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 TMCO3Q6UWJ1 677 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 SLC36A4Q6YBV0 504 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 DSG4Q86SJ6 1040 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 ZNF354CQ86Y25 554 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 RHOT1Q8IXI2 618 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 ACRBPQ8NEB7 543 aa26.31■■□□□ 1.8
TRIM28-204ENST00000594806 ANP32BQ92688 251 aaKnown RBP26.31■■□□□ 1.8
TRIM28-204ENST00000594806 ISG20Q96AZ6 181 aaKnown RBP26.31■■□□□ 1.8
TRIM28-204ENST00000594806 USP36Q9P275 1121 aaKnown RBP26.31■■□□□ 1.8
TRIM28-204ENST00000594806 NYNRINQ9P2P1 1898 aaKnown RBP26.3■■□□□ 1.8
TRIM28-204ENST00000594806 ZNF487B1APH4 448 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms