RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 IFNAR2P48551 515 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 LRRC14Q15048 493 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 PARP6Q2NL67 630 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 ARTNQ5T4W7 220 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 ZNF697Q5TEC3 545 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 HDAC11Q96DB2 347 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 SIK2Q9H0K1 926 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 ZDHHC7Q9NXF8 308 aa23.14■■□□□ 1.29
CDX1-201ENST00000231656 NOTCH4Q99466 2003 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 PRPF4O43172 522 aaKnown RBP eCLIP23.13■■□□□ 1.29
CDX1-201ENST00000231656 APOEP02649 317 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 GSTA2P09210 222 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 MYL4P12829 197 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 MLNP12872 115 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 PTPN2P17706 415 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 PTPN3P26045 913 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 CDC25CP30307 473 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 STX2P32856 288 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 SERPINB6P35237 376 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 CYP4F8P98187 520 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 TXNDC8Q6A555 127 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 ELMSAN1Q6PJG2 1045 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 MRPS31Q92665 395 aaKnown RBP23.13■■□□□ 1.29
CDX1-201ENST00000231656 KIF9Q9HAQ2 790 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 TRPC7Q9HCX4 862 aa23.13■■□□□ 1.29
CDX1-201ENST00000231656 A0A1W2PRU2 124 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 FAM47DPA6NHR8 397 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 F5H423 210 aaPredicted RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 CPP00450 1065 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 MX2P20592 715 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 PSMB4P28070 264 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 HOXC13P31276 330 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 SLC18A1P54219 525 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 EPHA5P54756 1037 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 KBTBD12Q3ZCT8 623 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 MANEALQ5VSG8 457 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 MPP5Q8N3R9 675 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 SLC44A1Q8WWI5 657 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 BTN2A3PQ96KV6 586 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 SLC22A12Q96S37 553 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 CYP2S1Q96SQ9 504 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 EBNA1BP2Q99848 306 aaKnown RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 ATXN3LQ9H3M9 355 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 DNMT3BQ9UBC3 853 aaKnown RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 CCDC195A0A1B0GUA6 201 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 A0A1W2PPM1 405 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 KCNK1O00180 336 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 NRG2O14511 850 aaPredicted RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 XYLBO75191 536 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 GARSP41250 739 aaKnown RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 CCR2P41597 374 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 KCNQ1P51787 676 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 SARNPP82979 210 aaKnown RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 COG7P83436 770 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 KCNC3Q14003 757 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 NUGGCQ68CJ6 796 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 PRPF39Q86UA1 669 aaKnown RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 PDCD7Q8N8D1 485 aaKnown RBP23.12■■□□□ 1.29
CDX1-201ENST00000231656 ATP6V0D2Q8N8Y2 350 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 VN1R2Q8NFZ6 395 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 CKAP2Q8WWK9 683 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 GCNAQ96QF7 691 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 PRKD2Q9BZL6 878 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 NKIRAS1Q9NYS0 192 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 HS3ST4Q9Y661 456 aa23.12■■□□□ 1.29
CDX1-201ENST00000231656 TRDMT1O14717 391 aaKnown RBP23.11■■□□□ 1.29
CDX1-201ENST00000231656 OLFM2O95897 454 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 GJA1P17302 382 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 PRKCHP24723 683 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 HTR7P34969 479 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 MLLT6P55198 1093 aaPredicted RBP23.11■■□□□ 1.29
CDX1-201ENST00000231656 PIK3R6Q5UE93 754 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 LRRC8BQ6P9F7 803 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 UNC5AQ6ZN44 842 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 LRRC34Q8IZ02 419 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 ARL14EPQ8N8R7 260 aaPredicted RBP23.11■■□□□ 1.29
CDX1-201ENST00000231656 DENND1AQ8TEH3 1009 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 DYDC1Q8WWB3 177 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 ZNF707Q96C28 371 aaPredicted RBP23.11■■□□□ 1.29
CDX1-201ENST00000231656 C1orf74Q96LT6 269 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 SMC6Q96SB8 1091 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 ZMYND15Q9H091 742 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 ZNF576Q9H609 170 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 MLXIPLQ9NP71 852 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 GKN1Q9NS71 199 aa23.11■■□□□ 1.29
CDX1-201ENST00000231656 SMG5Q9UPR3 1016 aaKnown RBP23.11■■□□□ 1.29
CDX1-201ENST00000231656 TRIOBPQ9H2D6 2365 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 MTSS1O43312 755 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 SPAG7O75391 227 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 RHOP08100 348 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 POU2F2P09086 479 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 MBL2P11226 248 aaPredicted RBP23.1■■□□□ 1.29
CDX1-201ENST00000231656 HDCP19113 662 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 PID1Q7Z2X4 250 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 CPLX4Q7Z7G2 160 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 C4orf33Q8N1A6 199 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 MAB21L3Q8N8X9 362 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 DEPDC1BQ8WUY9 529 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 SGSM3Q96HU1 749 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 CDCA3Q99618 268 aaPredicted RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms