RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ERMARDQ5T6L9 678 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 SLC36A4Q6YBV0 504 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 APCDD1Q8J025 514 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 NIPA2Q8N8Q9 360 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 TC2NQ8N9U0 490 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 SUMF1Q8NBK3 374 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 RUBCNQ92622 972 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 LOXL4Q96JB6 756 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 MRGPRX1Q96LB2 322 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 CCDC114Q96M63 670 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 RAB6CQ9H0N0 254 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 DHX35Q9H5Z1 703 aaKnown RBP13.33□□□□□ -0.28
CLK3-224ENST00000568605 ZFHX2Q9C0A1 2572 aaPredicted RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 MYO15AQ9UKN7 3530 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 TARSL2A2RTX5 802 aaKnown RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 MAP3K13O43283 966 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 CREB3O43889 395 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 RAMP2O60895 175 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 MIPP30301 263 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 CDC25BP30305 580 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 HOXC13P31276 330 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 CYLC1P35663 651 aaPredicted RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 P2RY2P41231 377 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 VASPP50552 380 aaPredicted RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 CLCN6P51797 869 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 GNA12Q03113 381 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 ZBTB16Q05516 673 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 SRSF5Q13243 272 aaKnown RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 ASTE1Q2TB18 679 aaPredicted RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 ZNF776Q68DI1 518 aaPredicted RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 RETSATQ6NUM9 610 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 ASCL5Q7RTU5 278 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 DSG4Q86SJ6 1040 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 METTL3Q86U44 580 aaKnown RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 ALYREFQ86V81 257 aaKnown RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 TMPRSS6Q8IU80 811 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 RHOT2Q8IXI1 618 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 FAM160A2Q8N612 972 aaPredicted RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 ZNF366Q8N895 744 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 RTL3Q8N8U3 475 aaKnown RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 SIPA1Q96FS4 1042 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 MYO19Q96H55 970 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 ZC3H10Q96K80 434 aaKnown RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 MRGPRX3Q96LB0 322 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 PANX2Q96RD6 677 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 CHP1Q99653 195 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 SNRNP25Q9BV90 132 aaKnown RBP13.32□□□□□ -0.28
CLK3-224ENST00000568605 TRIM7Q9C029 511 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 ZWILCHQ9H900 591 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 CD248Q9HCU0 757 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 ATP13A1Q9HD20 1204 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 PCSK1NQ9UHG2 260 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 HPCAL4Q9UM19 191 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 USP18Q9UMW8 372 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 SCML1Q9UN30 329 aa13.32□□□□□ -0.28
CLK3-224ENST00000568605 CXorf51AA0A1B0GTR3 108 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 EEF2KO00418 725 aaKnown RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 LRP3O75074 770 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 DNTTP04053 509 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 OXTRP30559 389 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 HOXD11P31277 338 aaPredicted RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 ARL4AP40617 200 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 DPP6P42658 865 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 CTSOP43234 321 aaPredicted RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 STK19P49842 368 aaPredicted RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 COPAP53621 1224 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 SEMA3BQ13214 749 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 ELAVL3Q14576 367 aaKnown RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 SPA17Q15506 151 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 LPAL2Q16609 132 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 HADHQ16836 314 aaKnown RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 ACCSLQ4AC99 568 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 PPP6R3Q5H9R7 873 aaPredicted RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 PMS2CLQ68D20 193 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 IL31Q6EBC2 164 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 KBTBD6Q86V97 674 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 NLRP14Q86W24 1093 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 CACUL1Q86Y37 369 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 CCDC170Q8IYT3 715 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 GPR161Q8N6U8 529 aaKnown RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 TEKT4Q8WW24 435 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 ARHGEF26Q96DR7 871 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 ERLEC1Q96DZ1 483 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 ALG14Q96F25 216 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 RPL10LQ96L21 214 aaKnown RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 MKRN2Q9H000 416 aaKnown RBP13.31□□□□□ -0.28
CLK3-224ENST00000568605 MAGEH1Q9H213 219 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 SPTLC3Q9NUV7 552 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 VPS51Q9UID3 782 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 INTUQ9ULD6 942 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 HS3ST2Q9Y278 367 aa13.31□□□□□ -0.28
CLK3-224ENST00000568605 TMEM131Q92545 1883 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 ZSCAN5CA6NGD5 496 aaPredicted RBP13.3□□□□□ -0.28
CLK3-224ENST00000568605 FAM72CH0Y354 149 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 H3BRJ5 948 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 CBX4O00257 560 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 DAPK3O43293 454 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 FOXD2O60548 495 aaPredicted RBP13.3□□□□□ -0.28
CLK3-224ENST00000568605 SIN3BO75182 1162 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 NDUFS2O75306 463 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms