RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 SLC35G2Q8TBE7 412 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 HSPH1Q92598 858 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 NKD2Q969F2 451 aaPredicted RBP13.71□□□□□ -0.21
VPS28-210ENST00000529182 MRGPRX1Q96LB2 322 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 SPON2Q9BUD6 331 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 UVRAGQ9P2Y5 699 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 VPS51Q9UID3 782 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 TFR2Q9UP52 801 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 DOCK4Q8N1I0 1966 aa13.71□□□□□ -0.22
VPS28-210ENST00000529182 PIEZO1Q92508 2521 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 ILVBLA1L0T0 632 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 EEF2KO00418 725 aaKnown RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 SIN3BO75182 1162 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 PROSCO94903 275 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 MT-CO1P00395 513 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 SRPRAP08240 638 aaKnown RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 RARAP10276 462 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 VAV1P15498 845 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 BCKDHBP21953 392 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 GJC1P36383 396 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 ACVRL1P37023 503 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 SSR1P43307 286 aaKnown RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 MAGEA1P43355 309 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 MAPKAPK2P49137 400 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 TPI1P60174 286 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 GNA12Q03113 381 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 SULT2A1Q06520 285 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 CAMK2GQ13555 558 aaPredicted RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 SIM2Q14190 667 aaPredicted RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 HNRNPA1L2Q32P51 320 aaKnown RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 USP39Q53GS9 565 aaKnown RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 PPP6R3Q5H9R7 873 aaPredicted RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 LINGO4Q6UY18 593 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 RAD9BQ6WBX8 426 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 CEP68Q76N32 757 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 CCDC170Q8IYT3 715 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 RTL3Q8N8U3 475 aaKnown RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 SUMF1Q8NBK3 374 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 GAB3Q8WWW8 586 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 EPC1Q9H2F5 836 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 ATP13A1Q9HD20 1204 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 PRSS16Q9NQE7 514 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 SLC25A13Q9UJS0 675 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 SMG5Q9UPR3 1016 aaKnown RBP13.7□□□□□ -0.22
VPS28-210ENST00000529182 EML5Q05BV3 1969 aa13.7□□□□□ -0.22
VPS28-210ENST00000529182 RIF1Q5UIP0 2472 aaKnown RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 PRR23AA6NEV1 266 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 K7ERQ8 282 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 CBX4O00257 560 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 ZBTB24O43167 697 aaPredicted RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 LCA5LO95447 670 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 LMNAP02545 664 aaKnown RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 GOT1P17174 413 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 CNR2P34972 360 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 CYLC1P35663 651 aaPredicted RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 TAS2R40P59535 323 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 KRT83P78385 493 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 MESDQ14696 234 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 MAP7D1Q3KQU3 841 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 IL31Q6EBC2 164 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 KBTBD6Q86V97 674 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 TMPRSS6Q8IU80 811 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 TMTC1Q8IUR5 882 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 TMEM139Q8IV31 216 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 DCAF4L2Q8NA75 395 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 KDM1BQ8NB78 822 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 OR2T3Q8NH03 318 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 RFFLQ8WZ73 363 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 ARHGEF2Q92974 986 aaKnown RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 PPP1R9BQ96SB3 815 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 BAG1Q99933 345 aaPredicted RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 NCAPGQ9BPX3 1015 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 C2orf49Q9BVC5 232 aaPredicted RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 NOL6Q9H6R4 1146 aaKnown RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS28-210ENST00000529182 IMPACTQ9P2X3 320 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 SUN2Q9UH99 717 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 PCDHA13Q9Y5I0 950 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 ACTL7AQ9Y615 435 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 EPN1Q9Y6I3 576 aaPredicted RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 SDK1Q7Z5N4 2213 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 CKAP5Q14008 2032 aa13.69□□□□□ -0.22
VPS28-210ENST00000529182 EP300Q09472 2414 aaPredicted RBP13.69□□□□□ -0.22
VPS28-210ENST00000529182 WASH4PA8MWX3 477 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 EIF3CLB5ME19 914 aaKnown RBP13.68□□□□□ -0.22
VPS28-210ENST00000529182 SMAD6O43541 496 aaKnown RBP13.68□□□□□ -0.22
VPS28-210ENST00000529182 RAMP2O60895 175 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 ZMPSTE24O75844 475 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 NDUFA10O95299 355 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 SRCP12931 536 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 NNMTP40261 264 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 P2RY2P41231 377 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 MRE11P49959 708 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 ARF5P84085 180 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 SPA17Q15506 151 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 DLG2Q15700 870 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 DPYSL2Q16555 572 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 ACCSLQ4AC99 568 aa13.68□□□□□ -0.22
VPS28-210ENST00000529182 ATP13A4Q4VNC1 1196 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms