RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 OR8H2Q8N162 312 aa10.65□□□□□ -0.71
LIG1-220ENST00000601091 REPS2Q8NFH8 660 aa10.65□□□□□ -0.71
LIG1-220ENST00000601091 AGR3Q8TD06 166 aa10.65□□□□□ -0.71
LIG1-220ENST00000601091 FNIP1Q8TF40 1166 aa10.65□□□□□ -0.71
LIG1-220ENST00000601091 LRMDAQ9H2I8 198 aa10.65□□□□□ -0.71
LIG1-220ENST00000601091 SLC35C2Q9NQQ7 365 aa10.65□□□□□ -0.71
LIG1-220ENST00000601091 ITGA11Q9UKX5 1188 aa10.65□□□□□ -0.71
LIG1-220ENST00000601091 MAFBQ9Y5Q3 323 aaPredicted RBP10.65□□□□□ -0.71
LIG1-220ENST00000601091 LOC100653049A0A140TA62 436 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 KRT34O76011 436 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CD4P01730 458 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 INSRRP14616 1297 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 KCNA3P22001 575 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CYP2F1P24903 491 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 NFE2L1Q14494 772 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 NPNTQ6UXI9 565 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CPT1BQ92523 772 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 RNF157Q96PX1 679 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 GBA3Q9H227 469 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ARHGEF3Q9NR81 526 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 AFF4Q9UHB7 1163 aaKnown RBP10.64□□□□□ -0.71
LIG1-220ENST00000601091 DCDC2Q9UHG0 476 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 AP4E1Q9UPM8 1137 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CFL2Q9Y281 166 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 TCRBV9S1A1TA0A576 114 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 KRBA1A5PL33 1030 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 F8W810 466 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 VTNP04004 478 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CFHP08603 1231 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 GSTA2P09210 222 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ETS2P15036 469 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 MMRN1Q13201 1228 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 DPYSQ14117 519 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 DENND5BQ6ZUT9 1274 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 SCUBE3Q8IX30 993 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 TTC16Q8NEE8 873 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 TRIM8Q9BZR9 551 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 AP5M1Q9H0R1 490 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ARMCX1Q9P291 453 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 TAGLN3Q9UI15 199 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 IPO11Q9UI26 975 aaKnown RBP10.64□□□□□ -0.71
LIG1-220ENST00000601091 PCDHGC3Q9UN70 934 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 TNFSF13BQ9Y275 285 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 FIS1Q9Y3D6 152 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 PRKAB1Q9Y478 270 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 SLC4A7Q9Y6M7 1214 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 PCNTO95613 3336 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 MAGEA13PA6NCF6 341 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 SYCE1LA8MT33 242 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 OR5F1O95221 314 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ATG7O95352 703 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 HEXBP07686 556 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 HADHAP40939 763 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 IST1P53990 364 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 TPI1P60174 286 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 MPP2Q14168 576 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 SNAP47Q5SQN1 464 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 METTL23Q86XA0 190 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ZDHHC14Q8IZN3 488 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CCNYL1Q8N7R7 359 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CDT1Q9H211 546 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ADAM7Q9H2U9 754 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ZNF624Q9P2J8 865 aaPredicted RBP10.64□□□□□ -0.71
LIG1-220ENST00000601091 ATP6V1HQ9UI12 483 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 RPL26L1Q9UNX3 145 aaKnown RBP10.64□□□□□ -0.71
LIG1-220ENST00000601091 NOD1Q9Y239 953 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CDY2AQ9Y6F7 541 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 CDY1Q9Y6F8 540 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 SNCAIPQ9Y6H5 919 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 ECM29Q5VYK3 1845 aa10.64□□□□□ -0.71
LIG1-220ENST00000601091 NFICP08651 508 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 PORP16435 677 aaPredicted RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 VARSP26640 1264 aaKnown RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 SIX1Q15475 284 aaPredicted RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 NEPROQ6NW34 567 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 RHBDF2Q6PJF5 856 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 ADGRD1Q6QNK2 874 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 CPXM1Q96SM3 734 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 AAASQ9NRG9 546 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 SLC17A7Q9P2U7 560 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 SOX13Q9UN79 622 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 PIN4Q9Y237 131 aaKnown RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 LAMB1P07942 1786 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 MAST2Q6P0Q8 1798 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 A6NHS1 94 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 EEF2KO00418 725 aaKnown RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 CDK2AP1O14519 115 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 MAGEB3O15480 346 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 MTSS1O43312 755 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 STRNO43815 780 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 B4GALT4O60513 344 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 CBFA2T3O75081 653 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 FARP2O94887 1054 aaPredicted RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 ACO1P21399 889 aaKnown RBP10.63□□□□□ -0.71
LIG1-220ENST00000601091 DNAJB2P25686 324 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 KLRC2P26717 231 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 SLC34A1Q06495 639 aa10.63□□□□□ -0.71
LIG1-220ENST00000601091 EFTUD2Q15029 972 aaKnown RBP eCLIP10.63□□□□□ -0.711e-6■■■■■ 30.3
LIG1-220ENST00000601091 SMU1Q2TAY7 513 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms