RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 LEFTY2O00292 366 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 GCATO75600 419 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 CEBPBP17676 345 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 WASHC5Q12768 1159 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 HYAL1Q12794 435 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 HIBCHQ6NVY1 386 aaPredicted RBP19.09■□□□□ 0.65
CLN3-206ENST00000360019 LRRC45Q96CN5 670 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 FAM129AQ9BZQ8 928 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 ZNF576Q9H609 170 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 NSUN3Q9H649 340 aaKnown RBP19.09■□□□□ 0.65
CLN3-206ENST00000360019 PIDD1Q9HB75 910 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 PAK5Q9P286 719 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 ANAPC5Q9UJX4 755 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 TPX2Q9ULW0 747 aaKnown RBP19.09■□□□□ 0.65
CLN3-206ENST00000360019 FARP1Q9Y4F1 1045 aaPredicted RBP19.09■□□□□ 0.65
CLN3-206ENST00000360019 RNF103O00237 685 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 GFRA2O00451 464 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 AVPR1AP37288 418 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 NDST2P52849 883 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 TCEAL5Q5H9L2 206 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 RABGAP1LQ5R372 815 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 RNASEH2BQ5TBB1 312 aaKnown RBP19.08■□□□□ 0.64
CLN3-206ENST00000360019 HTR3DQ70Z44 454 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 FAM217AQ8IXS0 508 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 BBOF1Q8ND07 529 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 RIN3Q8TB24 985 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 CPT1BQ92523 772 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 PPP2R3CQ969Q6 453 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 ZSWIM3Q96MP5 696 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 DDX50Q9BQ39 737 aaKnown RBP19.08■□□□□ 0.64
CLN3-206ENST00000360019 CEP41Q9BYV8 373 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 SH3BP1Q9Y3L3 701 aa19.08■□□□□ 0.64
CLN3-206ENST00000360019 UNC80Q8N2C7 3258 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 HELZP42694 1942 aaKnown RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 A0A0A0MRY4 1105 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 SOBPA7XYQ1 873 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ZNF197O14709 1029 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 LINC01565O15544 149 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 TSPAN3O60637 253 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 MAFKO60675 156 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ACTN2P35609 894 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 TNNT3P45378 269 aaPredicted RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 MAPKAPK2P49137 400 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 PAPOLAP51003 745 aaKnown RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 CCDC13Q8IYE1 715 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ATPAF2Q8N5M1 289 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ITFG1Q8TB96 612 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 SH3RF2Q8TEC5 729 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ING5Q8WYH8 240 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 SPATA13Q96N96 652 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 DZANK1Q9NVP4 752 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 DONSONQ9NYP3 566 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 SEPT10Q9P0V9 454 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 LSM7Q9UK45 103 aaKnown RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 MRPS23Q9Y3D9 190 aaKnown RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 NYNRINQ9P2P1 1898 aaKnown RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 PRAMEF12O95522 483 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 OR1E1P30953 314 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 CDH4P55283 916 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 CAV1Q03135 178 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ZNF33AQ06730 810 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ANKRD20A2Q5SQ80 823 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ANKRD20A1Q5TYW2 823 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ANKRD20A3Q5VUR7 823 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ANKRD22Q5VYY1 191 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 BBS7Q8IWZ6 715 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 ZSCAN18Q8TBC5 510 aaPredicted RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 USP13Q92995 863 aaPredicted RBP19.07■□□□□ 0.64
CLN3-206ENST00000360019 HMCESQ96FZ2 354 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 TSGA13Q96PP4 275 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 FUT8Q9BYC5 575 aa19.07■□□□□ 0.64
CLN3-206ENST00000360019 C2orf16Q68DN1 1984 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 PRRC2BQ5JSZ5 2229 aaKnown RBP19.06■□□□□ 0.64
CLN3-206ENST00000360019 SHROOM3Q8TF72 1996 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 TCRBV7S3A2A0A539 114 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 METTL18O95568 372 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 PTPN3P26045 913 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 CHKAP35790 457 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 BASP1P80723 227 aaKnown RBP19.06■□□□□ 0.64
CLN3-206ENST00000360019 ZBTB17Q13105 803 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 CBX2Q14781 532 aaPredicted RBP19.06■□□□□ 0.64
CLN3-206ENST00000360019 MORF4L2Q15014 288 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 RARS2Q5T160 578 aaKnown RBP19.06■□□□□ 0.64
CLN3-206ENST00000360019 FAXCQ5TGI0 409 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 TMEM184AQ6ZMB5 413 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 ZNF567Q8N184 647 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 NAT8LQ8N9F0 302 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 PRCCQ92733 491 aaPredicted RBP19.06■□□□□ 0.64
CLN3-206ENST00000360019 PWWP2AQ96N64 755 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 FERMT1Q9BQL6 677 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 RAB6BQ9NRW1 208 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 MTRF1LQ9UGC7 380 aaKnown RBP19.06■□□□□ 0.64
CLN3-206ENST00000360019 TRIOBPQ9H2D6 2365 aa19.06■□□□□ 0.64
CLN3-206ENST00000360019 A0A1B0GVM2 712 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 TCAF2A6NFQ2 919 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 RASA4BC9J798 803 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 RASA4O43374 803 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 RAMP2O60895 175 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms