RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 MPNDQ8N594 471 aa5.22□□□□□ -1.57
VIM-210ENST00000637053 ZFAND3Q9H8U3 227 aa5.22□□□□□ -1.57
VIM-210ENST00000637053 TPRNQ4KMQ1 711 aa5.21□□□□□ -1.58
VIM-210ENST00000637053 C6orf118Q5T5N4 469 aa5.21□□□□□ -1.58
VIM-210ENST00000637053 RETREG3Q86VR2 466 aa5.21□□□□□ -1.58
VIM-210ENST00000637053 WHAMMQ8TF30 809 aa5.21□□□□□ -1.58
VIM-210ENST00000637053 KRTAP4-8Q9BYQ9 185 aa5.21□□□□□ -1.58
VIM-210ENST00000637053 UNC93B1Q9H1C4 597 aa5.21□□□□□ -1.58
VIM-210ENST00000637053 PCDHGC3Q9UN70 934 aa5.21□□□□□ -1.58
VIM-210ENST00000637053 RNF225M0QZC1 329 aaPredicted RBP5.2□□□□□ -1.58
VIM-210ENST00000637053 CCNYL3P0C7X3 344 aa5.2□□□□□ -1.58
VIM-210ENST00000637053 VARSP26640 1264 aaKnown RBP5.2□□□□□ -1.58
VIM-210ENST00000637053 IRS1P35568 1242 aa5.2□□□□□ -1.58
VIM-210ENST00000637053 ZNF511Q8NB15 262 aa5.2□□□□□ -1.58
VIM-210ENST00000637053 ITPKCQ96DU7 683 aa5.2□□□□□ -1.58
VIM-210ENST00000637053 EVA1BQ9NVM1 165 aa5.2□□□□□ -1.58
VIM-210ENST00000637053 DNMT3LQ9UJW3 386 aa5.2□□□□□ -1.58
VIM-210ENST00000637053 DNMT3AQ9Y6K1 912 aaPredicted RBP5.2□□□□□ -1.58
VIM-210ENST00000637053 PLEKHG3A1L390 1219 aa5.19□□□□□ -1.58
VIM-210ENST00000637053 ARHGEF15O94989 841 aa5.19□□□□□ -1.58
VIM-210ENST00000637053 ZIC2O95409 532 aaPredicted RBP5.19□□□□□ -1.58
VIM-210ENST00000637053 NR3C2P08235 984 aa5.19□□□□□ -1.58
VIM-210ENST00000637053 MS4A1P11836 297 aa5.19□□□□□ -1.58
VIM-210ENST00000637053 MDM2Q00987 491 aaPredicted RBP5.19□□□□□ -1.58
VIM-210ENST00000637053 RNFT1Q5M7Z0 435 aa5.19□□□□□ -1.58
VIM-210ENST00000637053 IGHA1P01876 353 aa5.18□□□□□ -1.58
VIM-210ENST00000637053 COL25A1Q9BXS0 654 aaPredicted RBP5.18□□□□□ -1.58
VIM-210ENST00000637053 SOS2Q07890 1332 aaPredicted RBP5.18□□□□□ -1.58
VIM-210ENST00000637053 KCNH2Q12809 1159 aa5.17□□□□□ -1.58
VIM-210ENST00000637053 PTPRNQ16849 979 aa5.17□□□□□ -1.58
VIM-210ENST00000637053 P3H3Q8IVL6 736 aa5.17□□□□□ -1.58
VIM-210ENST00000637053 CDK15Q96Q40 435 aa5.17□□□□□ -1.58
VIM-210ENST00000637053 PLCB2Q00722 1185 aa5.16□□□□□ -1.58
VIM-210ENST00000637053 SVOPQ8N4V2 548 aa5.16□□□□□ -1.58
VIM-210ENST00000637053 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.15□□□□□ -1.59
VIM-210ENST00000637053 C6orf229H3BNL8 230 aa5.15□□□□□ -1.59
VIM-210ENST00000637053 BMP2P12643 396 aa5.15□□□□□ -1.59
VIM-210ENST00000637053 GRM5P41594 1212 aa5.15□□□□□ -1.59
VIM-210ENST00000637053 LINC00528Q8N1L1 170 aa5.15□□□□□ -1.59
VIM-210ENST00000637053 MEIOBQ8N635 442 aa5.15□□□□□ -1.59
VIM-210ENST00000637053 FOXJ1Q92949 421 aa5.15□□□□□ -1.59
VIM-210ENST00000637053 ADAM23O75077 832 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 ITGB2P05107 769 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 SLURP2P0DP57 97 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 FDX1P10109 184 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 PTSQ03393 145 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 SMYD5Q6GMV2 418 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 FAM174AQ8TBP5 190 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 NANOS1Q8WY41 292 aaKnown RBP5.14□□□□□ -1.59
VIM-210ENST00000637053 KRTAP9-2Q9BYQ4 174 aa5.14□□□□□ -1.59
VIM-210ENST00000637053 FOXK2Q01167 660 aa5.13□□□□□ -1.59
VIM-210ENST00000637053 ARID5BQ14865 1188 aa5.13□□□□□ -1.59
VIM-210ENST00000637053 C4orf48Q5BLP8 95 aa5.13□□□□□ -1.59
VIM-210ENST00000637053 GPIHBP1Q8IV16 184 aa5.13□□□□□ -1.59
VIM-210ENST00000637053 FAM217BQ9NTX9 383 aaPredicted RBP5.13□□□□□ -1.59
VIM-210ENST00000637053 PODXL2Q9NZ53 605 aa5.13□□□□□ -1.59
VIM-210ENST00000637053 GTF3C3Q9Y5Q9 886 aa5.13□□□□□ -1.59
VIM-210ENST00000637053 KRTAP9-6A0A140TA67 174 aa5.12□□□□□ -1.59
VIM-210ENST00000637053 IRF6O14896 467 aa5.12□□□□□ -1.59
VIM-210ENST00000637053 MAP2K5Q13163 448 aa5.12□□□□□ -1.59
VIM-210ENST00000637053 KANK3Q6NY19 840 aa5.12□□□□□ -1.59
VIM-210ENST00000637053 PRR7Q8TB68 274 aa5.12□□□□□ -1.59
VIM-210ENST00000637053 NDUFV2P19404 249 aa5.11□□□□□ -1.59
VIM-210ENST00000637053 NR5A1Q13285 461 aa5.11□□□□□ -1.59
VIM-210ENST00000637053 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.11□□□□□ -1.59
VIM-210ENST00000637053 NUTM1Q86Y26 1132 aa5.11□□□□□ -1.59
VIM-210ENST00000637053 CCDC155Q8N6L0 562 aa5.11□□□□□ -1.59
VIM-210ENST00000637053 FIGNL2A6NMB9 653 aa5.1□□□□□ -1.59
VIM-210ENST00000637053 TTLL8A6PVC2 850 aa5.1□□□□□ -1.59
VIM-210ENST00000637053 UPP2O95045 317 aa5.1□□□□□ -1.59
VIM-210ENST00000637053 HAP1P54257 671 aaPredicted RBP5.1□□□□□ -1.59
VIM-210ENST00000637053 MARSP56192 900 aaKnown RBP5.1□□□□□ -1.59
VIM-210ENST00000637053 PLA2G4EQ3MJ16 856 aa5.1□□□□□ -1.59
VIM-210ENST00000637053 VWA5B2Q8N398 1253 aa5.1□□□□□ -1.59
VIM-210ENST00000637053 DESI1Q6ICB0 168 aa5.09□□□□□ -1.59
VIM-210ENST00000637053 LYPD4Q6UWN0 246 aa5.09□□□□□ -1.59
VIM-210ENST00000637053 SCARF2Q96GP6 870 aaPredicted RBP5.09□□□□□ -1.59
VIM-210ENST00000637053 SPOCK3Q9BQ16 436 aa5.09□□□□□ -1.59
VIM-210ENST00000637053 GPCPD1Q9NPB8 672 aa5.09□□□□□ -1.59
VIM-210ENST00000637053 SLC35F4A4IF30 521 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 MOXD2PA6NHM9 499 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 MSTNO14793 375 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 SPTLC1O15269 473 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 PROCP04070 461 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 CTHP32929 405 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 LYPD8Q6UX82 237 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 SPIRE2Q8WWL2 714 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 TSEN34Q9BSV6 310 aaKnown RBP5.08□□□□□ -1.6
VIM-210ENST00000637053 MAP10Q9P2G4 905 aa5.08□□□□□ -1.6
VIM-210ENST00000637053 EIF5BO60841 1220 aaKnown RBP5.07□□□□□ -1.6
VIM-210ENST00000637053 ADAMTS2O95450 1211 aa5.07□□□□□ -1.6
VIM-210ENST00000637053 ITGA6P23229 1130 aa5.07□□□□□ -1.6
VIM-210ENST00000637053 CCDC102AQ96A19 550 aa5.07□□□□□ -1.6
VIM-210ENST00000637053 DCAF5Q96JK2 942 aa5.07□□□□□ -1.6
VIM-210ENST00000637053 PSMG3-AS1Q96PY0 264 aa5.07□□□□□ -1.6
VIM-210ENST00000637053 MINK1Q8N4C8 1332 aaPredicted RBP5.06□□□□□ -1.6
VIM-210ENST00000637053 F12P00748 615 aaPredicted RBP5.06□□□□□ -1.6
VIM-210ENST00000637053 CLCN1P35523 988 aa5.06□□□□□ -1.6
VIM-210ENST00000637053 CNTNAP5Q8WYK1 1306 aa5.05□□□□□ -1.6
VIM-210ENST00000637053 CDC14CA4D256 554 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms