RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PROSER2Q86WR7 435 aaPredicted RBP22.51■■□□□ 1.19
CLN3-252ENST00000636907 CFAP53Q96M91 514 aa22.5■■□□□ 1.19
CLN3-252ENST00000636907 ZRANB1Q9UGI0 708 aa22.5■■□□□ 1.19
CLN3-252ENST00000636907 STRCQ7RTU9 1775 aa22.5■■□□□ 1.19
CLN3-252ENST00000636907 SSH2Q76I76 1423 aa22.5■■□□□ 1.19
CLN3-252ENST00000636907 STRCP1A6NGW2 1772 aa22.49■■□□□ 1.19
CLN3-252ENST00000636907 C14orf37Q86TY3 774 aa22.49■■□□□ 1.19
CLN3-252ENST00000636907 NGDNQ8NEJ9 315 aaKnown RBP22.49■■□□□ 1.19
CLN3-252ENST00000636907 COG3Q96JB2 828 aa22.47■■□□□ 1.19
CLN3-252ENST00000636907 COL3A1P02461 1466 aaPredicted RBP22.45■■□□□ 1.18
CLN3-252ENST00000636907 FBLN1P23142 703 aa22.45■■□□□ 1.18
CLN3-252ENST00000636907 SALL2Q9Y467 1007 aaPredicted RBP22.45■■□□□ 1.18
CLN3-252ENST00000636907 TTC21AQ8NDW8 1320 aa22.43■■□□□ 1.18
CLN3-252ENST00000636907 OVOS2A0A0J9YW53 1432 aa22.43■■□□□ 1.18
CLN3-252ENST00000636907 OVOS2Q6IE36 1432 aa22.43■■□□□ 1.18
CLN3-252ENST00000636907 CCDC146Q8IYE0 955 aa22.42■■□□□ 1.18
CLN3-252ENST00000636907 POLKQ9UBT6 870 aa22.42■■□□□ 1.18
CLN3-252ENST00000636907 PHF8Q9UPP1 1060 aa22.42■■□□□ 1.18
CLN3-252ENST00000636907 TMEM94Q12767 1356 aa22.42■■□□□ 1.18
CLN3-252ENST00000636907 AATKQ6ZMQ8 1374 aa22.42■■□□□ 1.18
CLN3-252ENST00000636907 PNPLA6Q8IY17 1366 aa22.42■■□□□ 1.18
CLN3-252ENST00000636907 MAP2P11137 1827 aaKnown RBP22.42■■□□□ 1.18
CLN3-252ENST00000636907 C19orf44Q9H6X5 657 aa22.39■■□□□ 1.18
CLN3-252ENST00000636907 SMG6Q86US8 1419 aaKnown RBP22.39■■□□□ 1.18
CLN3-252ENST00000636907 ESCO1Q5FWF5 840 aa22.39■■□□□ 1.17
CLN3-252ENST00000636907 PIK3C2AO00443 1686 aa22.38■■□□□ 1.17
CLN3-252ENST00000636907 NCOA3Q9Y6Q9 1424 aa22.38■■□□□ 1.17
CLN3-252ENST00000636907 EMILIN1Q9Y6C2 1016 aa22.38■■□□□ 1.17
CLN3-252ENST00000636907 NUDCQ9Y266 331 aa22.37■■□□□ 1.17
CLN3-252ENST00000636907 PPM1GO15355 546 aaPredicted RBP22.36■■□□□ 1.17
CLN3-252ENST00000636907 USP31Q70CQ4 1352 aa22.36■■□□□ 1.17
CLN3-252ENST00000636907 CDK12Q9NYV4 1490 aaPredicted RBP22.35■■□□□ 1.17
CLN3-252ENST00000636907 APAF1O14727 1248 aa22.35■■□□□ 1.17
CLN3-252ENST00000636907 DIAPH1O60610 1272 aaKnown RBP22.35■■□□□ 1.17
CLN3-252ENST00000636907 RRS1Q15050 365 aaKnown RBP22.35■■□□□ 1.17
CLN3-252ENST00000636907 U2AF1L5P0DN76 240 aaPredicted RBP22.34■■□□□ 1.17
CLN3-252ENST00000636907 U2AF1Q01081 240 aaKnown RBP eCLIP22.34■■□□□ 1.17
CLN3-252ENST00000636907 PDE3BQ13370 1112 aa22.34■■□□□ 1.17
CLN3-252ENST00000636907 ORAI2Q96SN7 254 aa22.34■■□□□ 1.17
CLN3-252ENST00000636907 C1orf167Q5SNV9 1468 aa22.34■■□□□ 1.17
CLN3-252ENST00000636907 DCCP43146 1447 aa22.33■■□□□ 1.17
CLN3-252ENST00000636907 U2SURPO15042 1029 aaKnown RBP22.33■■□□□ 1.16
CLN3-252ENST00000636907 RUNDC1Q96C34 613 aa22.33■■□□□ 1.16
CLN3-252ENST00000636907 USP54Q70EL1 1684 aa22.31■■□□□ 1.16
CLN3-252ENST00000636907 ATF3P18847 181 aa22.31■■□□□ 1.16
CLN3-252ENST00000636907 SUPT16HQ9Y5B9 1047 aaKnown RBP22.31■■□□□ 1.16
CLN3-252ENST00000636907 XIRP1Q702N8 1843 aaKnown RBP22.31■■□□□ 1.16
CLN3-252ENST00000636907 MST1RQ04912 1400 aa22.31■■□□□ 1.16
CLN3-252ENST00000636907 ZNF521Q96K83 1311 aa22.3■■□□□ 1.16
CLN3-252ENST00000636907 PAK3O75914 559 aaPredicted RBP22.3■■□□□ 1.16
CLN3-252ENST00000636907 MARF1Q9Y4F3 1742 aaKnown RBP22.3■■□□□ 1.16
CLN3-252ENST00000636907 IQSEC2Q5JU85 1478 aa22.3■■□□□ 1.16
CLN3-252ENST00000636907 ZNF335Q9H4Z2 1342 aaPredicted RBP22.3■■□□□ 1.16
CLN3-252ENST00000636907 PSME1Q06323 249 aa22.3■■□□□ 1.16
CLN3-252ENST00000636907 CDCA7LQ96GN5 454 aa22.3■■□□□ 1.16
CLN3-252ENST00000636907 KIF1AQ12756 1690 aa22.29■■□□□ 1.16
CLN3-252ENST00000636907 NLRP6P59044 892 aa22.29■■□□□ 1.16
CLN3-252ENST00000636907 LRRC7Q96NW7 1537 aa22.28■■□□□ 1.16
CLN3-252ENST00000636907 ABTB2Q8N961 1025 aa22.28■■□□□ 1.16
CLN3-252ENST00000636907 SOX12O15370 315 aa22.27■■□□□ 1.16
CLN3-252ENST00000636907 NUTM2GQ5VZR2 741 aa22.27■■□□□ 1.16
CLN3-252ENST00000636907 MSH6P52701 1360 aa22.27■■□□□ 1.16
CLN3-252ENST00000636907 PEAK1Q9H792 1746 aa22.27■■□□□ 1.16
CLN3-252ENST00000636907 FOXO3O43524 673 aa22.26■■□□□ 1.15
CLN3-252ENST00000636907 IL13P35225 146 aa22.26■■□□□ 1.15
CLN3-252ENST00000636907 NGEFQ8N5V2 710 aa22.26■■□□□ 1.15
CLN3-252ENST00000636907 CADPS2Q86UW7 1296 aa22.26■■□□□ 1.15
CLN3-252ENST00000636907 TCP11L2Q8N4U5 519 aa22.26■■□□□ 1.15
CLN3-252ENST00000636907 PLEKHF1Q96S99 279 aa22.25■■□□□ 1.15
CLN3-252ENST00000636907 MAP3K19Q56UN5 1328 aa22.23■■□□□ 1.15
CLN3-252ENST00000636907 NEFLP07196 543 aa22.23■■□□□ 1.15
CLN3-252ENST00000636907 XPCQ01831 940 aaPredicted RBP22.23■■□□□ 1.15
CLN3-252ENST00000636907 RRP7AQ9Y3A4 280 aaKnown RBP22.23■■□□□ 1.15
CLN3-252ENST00000636907 GOLGA2Q08379 1002 aa22.22■■□□□ 1.15
CLN3-252ENST00000636907 FKBP8Q14318 412 aa22.22■■□□□ 1.15
CLN3-252ENST00000636907 DMRT2Q9Y5R5 561 aa22.22■■□□□ 1.15
CLN3-252ENST00000636907 TRPM3Q9HCF6 1732 aaPredicted RBP22.22■■□□□ 1.15
CLN3-252ENST00000636907 FCHSD2O94868 740 aa22.2■■□□□ 1.15
CLN3-252ENST00000636907 NEUROD2Q15784 382 aa22.2■■□□□ 1.15
CLN3-252ENST00000636907 SBNO1A3KN83 1393 aa22.2■■□□□ 1.14
CLN3-252ENST00000636907 KRT28Q7Z3Y7 464 aa22.2■■□□□ 1.14
CLN3-252ENST00000636907 RSPH6AQ9H0K4 717 aa22.2■■□□□ 1.14
CLN3-252ENST00000636907 EIF4A2Q14240 407 aaKnown RBP22.19■■□□□ 1.14
CLN3-252ENST00000636907 HSP90AB2PQ58FF8 381 aa22.19■■□□□ 1.14
CLN3-252ENST00000636907 WWC1Q8IX03 1113 aa22.19■■□□□ 1.14
CLN3-252ENST00000636907 PNNQ9H307 717 aaKnown RBP22.19■■□□□ 1.14
CLN3-252ENST00000636907 MAPK8IP3Q9UPT6 1336 aa22.19■■□□□ 1.14
CLN3-252ENST00000636907 FLT4P35916 1363 aa22.18■■□□□ 1.14
CLN3-252ENST00000636907 NCBP3Q53F19 620 aaKnown RBP22.18■■□□□ 1.14
CLN3-252ENST00000636907 PHF23Q9BUL5 403 aaPredicted RBP22.18■■□□□ 1.14
CLN3-252ENST00000636907 HMOX1P09601 288 aa22.17■■□□□ 1.14
CLN3-252ENST00000636907 SLFN5Q08AF3 891 aa22.17■■□□□ 1.14
CLN3-252ENST00000636907 PRKAR2BP31323 418 aa22.17■■□□□ 1.14
CLN3-252ENST00000636907 CCDC27Q2M243 656 aa22.17■■□□□ 1.14
CLN3-252ENST00000636907 AMPHP49418 695 aa22.16■■□□□ 1.14
CLN3-252ENST00000636907 DUSP27Q5VZP5 1158 aa22.16■■□□□ 1.14
CLN3-252ENST00000636907 SPINK5Q9NQ38 1064 aaPredicted RBP22.16■■□□□ 1.14
CLN3-252ENST00000636907 NFAT5O94916 1531 aa22.15■■□□□ 1.14
CLN3-252ENST00000636907 TMPOP42166 694 aaKnown RBP22.14■■□□□ 1.14
CLN3-252ENST00000636907 TRMT2AQ8IZ69 625 aaKnown RBP22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms