RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 CABP1Q9NZU7 370 aa20.16■□□□□ 0.82
PNKP-223ENST00000629179 BCL9LQ86UU0 1499 aa20.13■□□□□ 0.81
PNKP-223ENST00000629179 RBM6P78332 1123 aaKnown RBP20.13■□□□□ 0.81
PNKP-223ENST00000629179 NUTM2GQ5VZR2 741 aa20.13■□□□□ 0.81
PNKP-223ENST00000629179 CCER1Q8TC90 406 aaPredicted RBP20.13■□□□□ 0.81
PNKP-223ENST00000629179 TRPC5Q9UL62 973 aaPredicted RBP20.12■□□□□ 0.81
PNKP-223ENST00000629179 CRYBG1Q9Y4K1 1723 aa20.12■□□□□ 0.81
PNKP-223ENST00000629179 SBNO2Q9Y2G9 1366 aa20.11■□□□□ 0.81
PNKP-223ENST00000629179 TIMELESSQ9UNS1 1208 aa20.11■□□□□ 0.81
PNKP-223ENST00000629179 ATRNO75882 1429 aa20.1■□□□□ 0.81
PNKP-223ENST00000629179 FAM83GA6ND36 823 aa20.1■□□□□ 0.81
PNKP-223ENST00000629179 SLIT2O94813 1529 aa20.1■□□□□ 0.81
PNKP-223ENST00000629179 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.09■□□□□ 0.81
PNKP-223ENST00000629179 PLCH1Q4KWH8 1693 aa20.09■□□□□ 0.81
PNKP-223ENST00000629179 CDK12Q9NYV4 1490 aaPredicted RBP20.08■□□□□ 0.81
PNKP-223ENST00000629179 ST20-MTHFSA0A0A6YYL1 179 aa20.08■□□□□ 0.81
PNKP-223ENST00000629179 UNC5CLQ8IV45 518 aa20.08■□□□□ 0.81
PNKP-223ENST00000629179 ABTB2Q8N961 1025 aa20.08■□□□□ 0.81
PNKP-223ENST00000629179 AKAP12Q02952 1782 aa20.07■□□□□ 0.8
PNKP-223ENST00000629179 ATAD2Q6PL18 1390 aa20.07■□□□□ 0.8
PNKP-223ENST00000629179 USP6P35125 1406 aa20.06■□□□□ 0.8
PNKP-223ENST00000629179 NWD2Q9ULI1 1742 aa20.06■□□□□ 0.8
PNKP-223ENST00000629179 PHRF1Q9P1Y6 1649 aaKnown RBP20.05■□□□□ 0.8
PNKP-223ENST00000629179 RGS12O14924 1447 aa20.05■□□□□ 0.8
PNKP-223ENST00000629179 TESK2Q96S53 571 aa20.05■□□□□ 0.8
PNKP-223ENST00000629179 GJD4Q96KN9 370 aaPredicted RBP20.04■□□□□ 0.8
PNKP-223ENST00000629179 COL14A1Q05707 1796 aaKnown RBP20.03■□□□□ 0.8
PNKP-223ENST00000629179 ZNF692Q9BU19 519 aaPredicted RBP20.03■□□□□ 0.8
PNKP-223ENST00000629179 BRD4O60885 1362 aaPredicted RBP20.03■□□□□ 0.8
PNKP-223ENST00000629179 ZC3H6P61129 1189 aaKnown RBP20.02■□□□□ 0.8
PNKP-223ENST00000629179 NLRP13Q86W25 1043 aa20.02■□□□□ 0.8
PNKP-223ENST00000629179 PRDM11Q9NQV5 511 aa20.02■□□□□ 0.8
PNKP-223ENST00000629179 USP47Q96K76 1375 aa20.02■□□□□ 0.8
PNKP-223ENST00000629179 SSH2Q76I76 1423 aa20.02■□□□□ 0.79
PNKP-223ENST00000629179 TMC1Q8TDI8 760 aa20.01■□□□□ 0.79
PNKP-223ENST00000629179 BTG4Q9NY30 223 aa20.01■□□□□ 0.79
PNKP-223ENST00000629179 KIAA0232Q92628 1395 aa20■□□□□ 0.79
PNKP-223ENST00000629179 NRAPQ86VF7 1730 aa20■□□□□ 0.79
PNKP-223ENST00000629179 NLRP6P59044 892 aa20■□□□□ 0.79
PNKP-223ENST00000629179 CHRNA2Q15822 529 aa20■□□□□ 0.79
PNKP-223ENST00000629179 SLC12A5Q9H2X9 1139 aa20■□□□□ 0.79
PNKP-223ENST00000629179 CPSF1Q10570 1443 aaKnown RBP20■□□□□ 0.79
PNKP-223ENST00000629179 USP19O94966 1318 aa20■□□□□ 0.79
PNKP-223ENST00000629179 GLI3P10071 1580 aa20■□□□□ 0.79
PNKP-223ENST00000629179 KTN1Q86UP2 1357 aaKnown RBP19.99■□□□□ 0.79
PNKP-223ENST00000629179 VPS72Q15906 364 aa19.99■□□□□ 0.79
PNKP-223ENST00000629179 CCDC9Q9Y3X0 531 aaKnown RBP19.99■□□□□ 0.79
PNKP-223ENST00000629179 TTC21BQ7Z4L5 1316 aa19.99■□□□□ 0.79
PNKP-223ENST00000629179 PIK3C2AO00443 1686 aa19.98■□□□□ 0.79
PNKP-223ENST00000629179 PUS7Q96PZ0 661 aaKnown RBP19.98■□□□□ 0.79
PNKP-223ENST00000629179 NRKQ7Z2Y5 1582 aa19.98■□□□□ 0.79
PNKP-223ENST00000629179 MON2Q7Z3U7 1717 aa19.98■□□□□ 0.79
PNKP-223ENST00000629179 GCP02774 474 aa19.97■□□□□ 0.79
PNKP-223ENST00000629179 CD163L1Q9NR16 1453 aa19.97■□□□□ 0.79
PNKP-223ENST00000629179 SLC24A1O60721 1099 aa19.95■□□□□ 0.78
PNKP-223ENST00000629179 TTC21AQ8NDW8 1320 aa19.95■□□□□ 0.78
PNKP-223ENST00000629179 BRWD3Q6RI45 1802 aa19.95■□□□□ 0.78
PNKP-223ENST00000629179 HDGFL2Q7Z4V5 671 aaPredicted RBP19.94■□□□□ 0.78
PNKP-223ENST00000629179 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.94■□□□□ 0.78
PNKP-223ENST00000629179 UPF1Q92900 1129 aaKnown RBP eCLIP19.94■□□□□ 0.783e-6■■■□□ 18.2
PNKP-223ENST00000629179 TMF1P82094 1093 aa19.93■□□□□ 0.78
PNKP-223ENST00000629179 TERF2IPQ9NYB0 399 aa19.92■□□□□ 0.78
PNKP-223ENST00000629179 CPDO75976 1380 aa19.92■□□□□ 0.78
PNKP-223ENST00000629179 SLIT3O75094 1523 aa19.92■□□□□ 0.78
PNKP-223ENST00000629179 ZBTB7CA1YPR0 619 aa19.91■□□□□ 0.78
PNKP-223ENST00000629179 STRN4Q9NRL3 753 aa19.91■□□□□ 0.78
PNKP-223ENST00000629179 ZRANB1Q9UGI0 708 aa19.91■□□□□ 0.78
PNKP-223ENST00000629179 SEPT12Q8IYM1 358 aa19.9■□□□□ 0.78
PNKP-223ENST00000629179 A0A1W2PP64 1363 aa19.9■□□□□ 0.78
PNKP-223ENST00000629179 CAMTA1Q9Y6Y1 1673 aa19.9■□□□□ 0.78
PNKP-223ENST00000629179 SOX12O15370 315 aa19.89■□□□□ 0.77
PNKP-223ENST00000629179 ONECUT3O60422 494 aaPredicted RBP19.89■□□□□ 0.77
PNKP-223ENST00000629179 SPATA31A5Q5VU36 1347 aa19.89■□□□□ 0.77
PNKP-223ENST00000629179 NME9Q86XW9 330 aa19.89■□□□□ 0.77
PNKP-223ENST00000629179 SPATA31A7Q8IWB4 1347 aa19.89■□□□□ 0.77
PNKP-223ENST00000629179 LMO7Q8WWI1 1683 aa19.89■□□□□ 0.77
PNKP-223ENST00000629179 NINLQ9Y2I6 1382 aa19.88■□□□□ 0.77
PNKP-223ENST00000629179 EVA1CP58658 441 aa19.88■□□□□ 0.77
PNKP-223ENST00000629179 FAM98CQ17RN3 349 aaKnown RBP19.88■□□□□ 0.77
PNKP-223ENST00000629179 EDC4Q6P2E9 1401 aaKnown RBP19.87■□□□□ 0.77
PNKP-223ENST00000629179 RGPD5Q99666 1765 aa19.87■□□□□ 0.77
PNKP-223ENST00000629179 COL18A1P39060 1754 aa19.86■□□□□ 0.77
PNKP-223ENST00000629179 A0A0G2JS52 829 aa19.86■□□□□ 0.77
PNKP-223ENST00000629179 MYT1Q01538 1121 aa19.86■□□□□ 0.77
PNKP-223ENST00000629179 KCNH5Q8NCM2 988 aa19.86■□□□□ 0.77
PNKP-223ENST00000629179 USP31Q70CQ4 1352 aa19.85■□□□□ 0.77
PNKP-223ENST00000629179 SPATA31A1Q5TZJ5 1347 aa19.85■□□□□ 0.77
PNKP-223ENST00000629179 CDCA8Q53HL2 280 aa19.85■□□□□ 0.77
PNKP-223ENST00000629179 LARP1Q6PKG0 1096 aaKnown RBP19.85■□□□□ 0.77
PNKP-223ENST00000629179 USP54Q70EL1 1684 aa19.84■□□□□ 0.77
PNKP-223ENST00000629179 ARHGEF25Q86VW2 580 aa19.84■□□□□ 0.77
PNKP-223ENST00000629179 AATKQ6ZMQ8 1374 aa19.83■□□□□ 0.77
PNKP-223ENST00000629179 HSPA5P11021 654 aaKnown RBP19.83■□□□□ 0.77
PNKP-223ENST00000629179 EIF4G2P78344 907 aaKnown RBP eCLIP19.83■□□□□ 0.77
PNKP-223ENST00000629179 USP35Q9P2H5 1018 aa19.83■□□□□ 0.77
PNKP-223ENST00000629179 NFAT5O94916 1531 aa19.82■□□□□ 0.76
PNKP-223ENST00000629179 AXIN2Q9Y2T1 843 aa19.82■□□□□ 0.76
PNKP-223ENST00000629179 ANKRD36BQ8N2N9 1353 aa19.82■□□□□ 0.76
PNKP-223ENST00000629179 COL5A2P05997 1499 aaPredicted RBP19.81■□□□□ 0.76
PNKP-223ENST00000629179 KRT27Q7Z3Y8 459 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms