RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RALGAPBQ86X10 1494 aa27.34■■□□□ 1.97
CCDC28A-203ENST00000617445 NBPF8Q3BBV2 869 aa27.34■■□□□ 1.97
CCDC28A-203ENST00000617445 TRPM1Q7Z4N2 1603 aa27.34■■□□□ 1.97
CCDC28A-203ENST00000617445 PLCH1Q4KWH8 1693 aa27.33■■□□□ 1.97
CCDC28A-203ENST00000617445 SRPK2P78362 688 aaKnown RBP27.33■■□□□ 1.97
CCDC28A-203ENST00000617445 ACEP12821 1306 aa27.33■■□□□ 1.97
CCDC28A-203ENST00000617445 GLI3P10071 1580 aa27.31■■□□□ 1.96
CCDC28A-203ENST00000617445 QRICH2Q9H0J4 1663 aa27.3■■□□□ 1.96
CCDC28A-203ENST00000617445 ROCK2O75116 1388 aaKnown RBP27.3■■□□□ 1.96
CCDC28A-203ENST00000617445 TRIM26Q12899 539 aaPredicted RBP27.29■■□□□ 1.96
CCDC28A-203ENST00000617445 COL14A1Q05707 1796 aaKnown RBP27.29■■□□□ 1.96
CCDC28A-203ENST00000617445 CCDC125Q86Z20 511 aa27.28■■□□□ 1.96
CCDC28A-203ENST00000617445 BRD4O60885 1362 aaPredicted RBP27.27■■□□□ 1.96
CCDC28A-203ENST00000617445 ONECUT3O60422 494 aaPredicted RBP27.27■■□□□ 1.96
CCDC28A-203ENST00000617445 CCDC9Q9Y3X0 531 aaKnown RBP27.27■■□□□ 1.96
CCDC28A-203ENST00000617445 CRYBG1Q9Y4K1 1723 aa27.27■■□□□ 1.96
CCDC28A-203ENST00000617445 PPIP5K1Q6PFW1 1433 aa27.26■■□□□ 1.95
CCDC28A-203ENST00000617445 EVC2Q86UK5 1308 aa27.26■■□□□ 1.95
CCDC28A-203ENST00000617445 CABP2Q9NPB3 220 aa27.26■■□□□ 1.95
CCDC28A-203ENST00000617445 BTG4Q9NY30 223 aa27.26■■□□□ 1.95
CCDC28A-203ENST00000617445 PRDM11Q9NQV5 511 aa27.23■■□□□ 1.95
CCDC28A-203ENST00000617445 SEPT12Q8IYM1 358 aa27.22■■□□□ 1.95
CCDC28A-203ENST00000617445 ABTB2Q8N961 1025 aa27.22■■□□□ 1.95
CCDC28A-203ENST00000617445 NRAPQ86VF7 1730 aa27.21■■□□□ 1.95
CCDC28A-203ENST00000617445 CABP1Q9NZU7 370 aa27.19■■□□□ 1.94
CCDC28A-203ENST00000617445 TONSLQ96HA7 1378 aa27.19■■□□□ 1.94
CCDC28A-203ENST00000617445 EP400Q96L91 3159 aa27.18■■□□□ 1.94
CCDC28A-203ENST00000617445 NLRP13Q86W25 1043 aa27.18■■□□□ 1.94
CCDC28A-203ENST00000617445 PHRF1Q9P1Y6 1649 aaKnown RBP27.18■■□□□ 1.94
CCDC28A-203ENST00000617445 KIAA0232Q92628 1395 aa27.18■■□□□ 1.94
CCDC28A-203ENST00000617445 BRWD3Q6RI45 1802 aa27.18■■□□□ 1.94
CCDC28A-203ENST00000617445 NUTM2GQ5VZR2 741 aa27.17■■□□□ 1.94
CCDC28A-203ENST00000617445 USP19O94966 1318 aa27.15■■□□□ 1.94
CCDC28A-203ENST00000617445 SPATA31A5Q5VU36 1347 aa27.15■■□□□ 1.94
CCDC28A-203ENST00000617445 SPATA31A7Q8IWB4 1347 aa27.15■■□□□ 1.94
CCDC28A-203ENST00000617445 ZC3H6P61129 1189 aaKnown RBP27.14■■□□□ 1.94
CCDC28A-203ENST00000617445 KRT27Q7Z3Y8 459 aa27.14■■□□□ 1.94
CCDC28A-203ENST00000617445 ZNF692Q9BU19 519 aaPredicted RBP27.14■■□□□ 1.94
CCDC28A-203ENST00000617445 USP6P35125 1406 aa27.14■■□□□ 1.93
CCDC28A-203ENST00000617445 SBNO2Q9Y2G9 1366 aa27.13■■□□□ 1.93
CCDC28A-203ENST00000617445 CARD11Q9BXL7 1154 aa27.13■■□□□ 1.93
CCDC28A-203ENST00000617445 CPDO75976 1380 aa27.12■■□□□ 1.93
CCDC28A-203ENST00000617445 FAM98CQ17RN3 349 aaKnown RBP27.12■■□□□ 1.93
CCDC28A-203ENST00000617445 BLMP54132 1417 aaPredicted RBP27.11■■□□□ 1.93
CCDC28A-203ENST00000617445 A0A0G2JS52 829 aa27.1■■□□□ 1.93
CCDC28A-203ENST00000617445 GCP02774 474 aa27.1■■□□□ 1.93
CCDC28A-203ENST00000617445 MYT1Q01538 1121 aa27.1■■□□□ 1.93
CCDC28A-203ENST00000617445 CHRNA2Q15822 529 aa27.1■■□□□ 1.93
CCDC28A-203ENST00000617445 NRKQ7Z2Y5 1582 aa27.09■■□□□ 1.93
CCDC28A-203ENST00000617445 SSH2Q76I76 1423 aa27.07■■□□□ 1.92
CCDC28A-203ENST00000617445 EVA1CP58658 441 aa27.07■■□□□ 1.92
CCDC28A-203ENST00000617445 NLRP6P59044 892 aa27.07■■□□□ 1.92
CCDC28A-203ENST00000617445 SPATA31A1Q5TZJ5 1347 aa27.07■■□□□ 1.92
CCDC28A-203ENST00000617445 SF3B2Q13435 895 aaKnown RBP27.06■■□□□ 1.92
CCDC28A-203ENST00000617445 STRN4Q9NRL3 753 aa27.05■■□□□ 1.92
CCDC28A-203ENST00000617445 AKAP12Q02952 1782 aa27.02■■□□□ 1.92
CCDC28A-203ENST00000617445 TTC21AQ8NDW8 1320 aa27.02■■□□□ 1.92
CCDC28A-203ENST00000617445 CPSF1Q10570 1443 aaKnown RBP27.01■■□□□ 1.91
CCDC28A-203ENST00000617445 ZRANB1Q9UGI0 708 aa27.01■■□□□ 1.91
CCDC28A-203ENST00000617445 THSD7AQ9UPZ6 1657 aa27.01■■□□□ 1.91
CCDC28A-203ENST00000617445 CAMTA1Q9Y6Y1 1673 aa27.01■■□□□ 1.91
CCDC28A-203ENST00000617445 TTC21BQ7Z4L5 1316 aa27■■□□□ 1.91
CCDC28A-203ENST00000617445 SLC24A1O60721 1099 aa27■■□□□ 1.91
CCDC28A-203ENST00000617445 BARGINQ6ZT62 677 aa27■■□□□ 1.91
CCDC28A-203ENST00000617445 PUS7Q96PZ0 661 aaKnown RBP27■■□□□ 1.91
CCDC28A-203ENST00000617445 LMO7Q8WWI1 1683 aa27■■□□□ 1.91
CCDC28A-203ENST00000617445 SLIT3O75094 1523 aa27■■□□□ 1.91
CCDC28A-203ENST00000617445 KCNH5Q8NCM2 988 aa26.98■■□□□ 1.91
CCDC28A-203ENST00000617445 PIK3C2AO00443 1686 aa26.98■■□□□ 1.91
CCDC28A-203ENST00000617445 AATKQ6ZMQ8 1374 aa26.97■■□□□ 1.91
CCDC28A-203ENST00000617445 KTN1Q86UP2 1357 aaKnown RBP26.97■■□□□ 1.91
CCDC28A-203ENST00000617445 THRAP3Q9Y2W1 955 aaKnown RBP26.97■■□□□ 1.91
CCDC28A-203ENST00000617445 LARP1Q6PKG0 1096 aaKnown RBP26.95■■□□□ 1.9
CCDC28A-203ENST00000617445 TCP11L2Q8N4U5 519 aa26.95■■□□□ 1.9
CCDC28A-203ENST00000617445 USP35Q9P2H5 1018 aa26.93■■□□□ 1.9
CCDC28A-203ENST00000617445 COL5A2P05997 1499 aaPredicted RBP26.93■■□□□ 1.9
CCDC28A-203ENST00000617445 BAG6P46379 1132 aa26.92■■□□□ 1.9
CCDC28A-203ENST00000617445 MON2Q7Z3U7 1717 aa26.91■■□□□ 1.9
CCDC28A-203ENST00000617445 HDGFL2Q7Z4V5 671 aaPredicted RBP26.91■■□□□ 1.9
CCDC28A-203ENST00000617445 DEFB132Q7Z7B7 95 aa26.91■■□□□ 1.9
CCDC28A-203ENST00000617445 FAM196AQ6ZSG2 479 aa26.9■■□□□ 1.9
CCDC28A-203ENST00000617445 TMC1Q8TDI8 760 aa26.9■■□□□ 1.9
CCDC28A-203ENST00000617445 CRB1P82279 1406 aa26.9■■□□□ 1.9
CCDC28A-203ENST00000617445 ZBTB7CA1YPR0 619 aa26.89■■□□□ 1.9
CCDC28A-203ENST00000617445 ARHGEF25Q86VW2 580 aa26.89■■□□□ 1.9
CCDC28A-203ENST00000617445 TERF2IPQ9NYB0 399 aa26.89■■□□□ 1.9
CCDC28A-203ENST00000617445 TIMELESSQ9UNS1 1208 aa26.89■■□□□ 1.9
CCDC28A-203ENST00000617445 RGPD1P0DJD0 1748 aa26.88■■□□□ 1.89
CCDC28A-203ENST00000617445 PDE3BQ13370 1112 aa26.88■■□□□ 1.89
CCDC28A-203ENST00000617445 CLSPNQ9HAW4 1339 aa26.88■■□□□ 1.89
CCDC28A-203ENST00000617445 COL18A1P39060 1754 aa26.87■■□□□ 1.89
CCDC28A-203ENST00000617445 ST20-MTHFSA0A0A6YYL1 179 aa26.87■■□□□ 1.89
CCDC28A-203ENST00000617445 TESK2Q96S53 571 aa26.87■■□□□ 1.89
CCDC28A-203ENST00000617445 SLC12A5Q9H2X9 1139 aa26.87■■□□□ 1.89
CCDC28A-203ENST00000617445 USP31Q70CQ4 1352 aa26.86■■□□□ 1.89
CCDC28A-203ENST00000617445 NINLQ9Y2I6 1382 aa26.86■■□□□ 1.89
CCDC28A-203ENST00000617445 FAM182BQ5T319 152 aa26.86■■□□□ 1.89
CCDC28A-203ENST00000617445 CD163L1Q9NR16 1453 aa26.86■■□□□ 1.89
CCDC28A-203ENST00000617445 C11orf95C9JLR9 678 aaPredicted RBP26.85■■□□□ 1.89
CCDC28A-203ENST00000617445 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms