RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 BTG4Q9NY30 223 aa25.97■■□□□ 1.75
SHKBP1-227ENST00000602011 NRAPQ86VF7 1730 aa25.97■■□□□ 1.75
SHKBP1-227ENST00000602011 FAM182BQ5T319 152 aa25.95■■□□□ 1.74
SHKBP1-227ENST00000602011 PSDA5PKW4 1024 aaPredicted RBP25.94■■□□□ 1.74
SHKBP1-227ENST00000602011 TULP4Q9NRJ4 1543 aa25.93■■□□□ 1.74
SHKBP1-227ENST00000602011 ALS2Q96Q42 1657 aa25.92■■□□□ 1.74
SHKBP1-227ENST00000602011 NUDT16Q96DE0 195 aaKnown RBP25.89■■□□□ 1.74
SHKBP1-227ENST00000602011 COL14A1Q05707 1796 aaKnown RBP25.88■■□□□ 1.73
SHKBP1-227ENST00000602011 PAK3O75914 559 aaPredicted RBP25.88■■□□□ 1.73
SHKBP1-227ENST00000602011 BAG6P46379 1132 aa25.87■■□□□ 1.73
SHKBP1-227ENST00000602011 EN1Q05925 392 aaPredicted RBP25.86■■□□□ 1.73
SHKBP1-227ENST00000602011 CCDC61Q9Y6R9 512 aa25.86■■□□□ 1.73
SHKBP1-227ENST00000602011 CDK19Q9BWU1 502 aa25.85■■□□□ 1.73
SHKBP1-227ENST00000602011 CRYBG1Q9Y4K1 1723 aa25.85■■□□□ 1.73
SHKBP1-227ENST00000602011 SPATA31A5Q5VU36 1347 aa25.85■■□□□ 1.73
SHKBP1-227ENST00000602011 SPATA31A7Q8IWB4 1347 aa25.85■■□□□ 1.73
SHKBP1-227ENST00000602011 PRDM11Q9NQV5 511 aa25.83■■□□□ 1.73
SHKBP1-227ENST00000602011 LRP5O75197 1615 aa25.83■■□□□ 1.73
SHKBP1-227ENST00000602011 PLEKHG3A1L390 1219 aa25.82■■□□□ 1.72
SHKBP1-227ENST00000602011 CHRNA2Q15822 529 aa25.82■■□□□ 1.72
SHKBP1-227ENST00000602011 NUTM2GQ5VZR2 741 aa25.8■■□□□ 1.72
SHKBP1-227ENST00000602011 NBPF8Q3BBV2 869 aa25.79■■□□□ 1.72
SHKBP1-227ENST00000602011 THSD7AQ9UPZ6 1657 aa25.79■■□□□ 1.72
SHKBP1-227ENST00000602011 KIAA0232Q92628 1395 aa25.79■■□□□ 1.72
SHKBP1-227ENST00000602011 STRN4Q9NRL3 753 aa25.78■■□□□ 1.72
SHKBP1-227ENST00000602011 POLR3AO14802 1390 aaPredicted RBP25.78■■□□□ 1.72
SHKBP1-227ENST00000602011 ATP7BP35670 1465 aa25.78■■□□□ 1.72
SHKBP1-227ENST00000602011 RGPD1P0DJD0 1748 aa25.77■■□□□ 1.72
SHKBP1-227ENST00000602011 R3HDM1Q15032 1099 aaKnown RBP25.77■■□□□ 1.72
SHKBP1-227ENST00000602011 ARHGEF28Q8N1W1 1705 aaKnown RBP25.77■■□□□ 1.72
SHKBP1-227ENST00000602011 ZC3H6P61129 1189 aaKnown RBP25.76■■□□□ 1.71
SHKBP1-227ENST00000602011 ACEP12821 1306 aa25.75■■□□□ 1.71
SHKBP1-227ENST00000602011 EZH2Q15910 746 aaKnown RBP25.75■■□□□ 1.71
SHKBP1-227ENST00000602011 TNS1Q9HBL0 1735 aaKnown RBP25.74■■□□□ 1.71
SHKBP1-227ENST00000602011 SPATA31A1Q5TZJ5 1347 aa25.74■■□□□ 1.71
SHKBP1-227ENST00000602011 BRD4O60885 1362 aaPredicted RBP25.73■■□□□ 1.71
SHKBP1-227ENST00000602011 USP35Q9P2H5 1018 aa25.73■■□□□ 1.71
SHKBP1-227ENST00000602011 PHRF1Q9P1Y6 1649 aaKnown RBP25.73■■□□□ 1.71
SHKBP1-227ENST00000602011 ITSN1Q15811 1721 aa25.72■■□□□ 1.71
SHKBP1-227ENST00000602011 KIAA1210Q9ULL0 1709 aa25.72■■□□□ 1.71
SHKBP1-227ENST00000602011 TRIM37O94972 964 aa25.72■■□□□ 1.71
SHKBP1-227ENST00000602011 NBPF1Q3BBV0 1214 aa25.71■■□□□ 1.71
SHKBP1-227ENST00000602011 ABTB2Q8N961 1025 aa25.71■■□□□ 1.71
SHKBP1-227ENST00000602011 CENPJQ9HC77 1338 aaPredicted RBP25.7■■□□□ 1.71
SHKBP1-227ENST00000602011 EVA1CP58658 441 aa25.7■■□□□ 1.7
SHKBP1-227ENST00000602011 NLRP13Q86W25 1043 aa25.7■■□□□ 1.7
SHKBP1-227ENST00000602011 SRPK2P78362 688 aaKnown RBP25.68■■□□□ 1.7
SHKBP1-227ENST00000602011 FAM196AQ6ZSG2 479 aa25.68■■□□□ 1.7
SHKBP1-227ENST00000602011 DISP2A7MBM2 1401 aa25.68■■□□□ 1.7
SHKBP1-227ENST00000602011 BARGINQ6ZT62 677 aa25.67■■□□□ 1.7
SHKBP1-227ENST00000602011 CAMKK2Q96RR4 588 aa25.67■■□□□ 1.7
SHKBP1-227ENST00000602011 CPDO75976 1380 aa25.66■■□□□ 1.7
SHKBP1-227ENST00000602011 TOPAZ1Q8N9V7 1692 aa25.64■■□□□ 1.7
SHKBP1-227ENST00000602011 APBA3O96018 575 aa25.64■■□□□ 1.7
SHKBP1-227ENST00000602011 THRAP3Q9Y2W1 955 aaKnown RBP25.64■■□□□ 1.7
SHKBP1-227ENST00000602011 SSH2Q76I76 1423 aa25.63■■□□□ 1.69
SHKBP1-227ENST00000602011 C11orf95C9JLR9 678 aaPredicted RBP25.63■■□□□ 1.69
SHKBP1-227ENST00000602011 LARP1Q6PKG0 1096 aaKnown RBP25.63■■□□□ 1.69
SHKBP1-227ENST00000602011 USP19O94966 1318 aa25.63■■□□□ 1.69
SHKBP1-227ENST00000602011 CAMTA1Q9Y6Y1 1673 aa25.62■■□□□ 1.69
SHKBP1-227ENST00000602011 NRKQ7Z2Y5 1582 aa25.62■■□□□ 1.69
SHKBP1-227ENST00000602011 GCP02774 474 aa25.61■■□□□ 1.69
SHKBP1-227ENST00000602011 PDE3BQ13370 1112 aa25.6■■□□□ 1.69
SHKBP1-227ENST00000602011 CABP2Q9NPB3 220 aa25.6■■□□□ 1.69
SHKBP1-227ENST00000602011 PPIP5K1Q6PFW1 1433 aa25.6■■□□□ 1.69
SHKBP1-227ENST00000602011 TCP11L2Q8N4U5 519 aa25.59■■□□□ 1.69
SHKBP1-227ENST00000602011 L3MBTL2Q969R5 705 aa25.59■■□□□ 1.69
SHKBP1-227ENST00000602011 EVC2Q86UK5 1308 aa25.58■■□□□ 1.69
SHKBP1-227ENST00000602011 ZNF692Q9BU19 519 aaPredicted RBP25.57■■□□□ 1.68
SHKBP1-227ENST00000602011 CABP1Q9NZU7 370 aa25.57■■□□□ 1.68
SHKBP1-227ENST00000602011 PARD3Q8TEW0 1356 aa25.56■■□□□ 1.68
SHKBP1-227ENST00000602011 LMO7Q8WWI1 1683 aa25.56■■□□□ 1.68
SHKBP1-227ENST00000602011 ZBTB7CA1YPR0 619 aa25.55■■□□□ 1.68
SHKBP1-227ENST00000602011 NLRP6P59044 892 aa25.54■■□□□ 1.68
SHKBP1-227ENST00000602011 RREB1Q92766 1687 aa25.53■■□□□ 1.68
SHKBP1-227ENST00000602011 NUP188Q5SRE5 1749 aa25.52■■□□□ 1.68
SHKBP1-227ENST00000602011 USP6P35125 1406 aa25.5■■□□□ 1.67
SHKBP1-227ENST00000602011 AATKQ6ZMQ8 1374 aa25.5■■□□□ 1.67
SHKBP1-227ENST00000602011 COL5A2P05997 1499 aaPredicted RBP25.49■■□□□ 1.67
SHKBP1-227ENST00000602011 KCNH5Q8NCM2 988 aa25.48■■□□□ 1.67
SHKBP1-227ENST00000602011 ROCK2O75116 1388 aaKnown RBP25.45■■□□□ 1.67
SHKBP1-227ENST00000602011 NBPF14Q5TI25 921 aa25.45■■□□□ 1.66
SHKBP1-227ENST00000602011 SIN3AQ96ST3 1273 aa25.45■■□□□ 1.66
SHKBP1-227ENST00000602011 CDCA7Q9BWT1 371 aaPredicted RBP25.45■■□□□ 1.66
SHKBP1-227ENST00000602011 CRB1P82279 1406 aa25.45■■□□□ 1.66
SHKBP1-227ENST00000602011 TTC21AQ8NDW8 1320 aa25.44■■□□□ 1.66
SHKBP1-227ENST00000602011 PARP4Q9UKK3 1724 aaKnown RBP25.44■■□□□ 1.66
SHKBP1-227ENST00000602011 NEUROD1Q13562 356 aa25.43■■□□□ 1.66
SHKBP1-227ENST00000602011 QRICH2Q9H0J4 1663 aa25.42■■□□□ 1.66
SHKBP1-227ENST00000602011 PTF1AQ7RTS3 328 aa25.42■■□□□ 1.66
SHKBP1-227ENST00000602011 TTC21BQ7Z4L5 1316 aa25.4■■□□□ 1.66
SHKBP1-227ENST00000602011 TOM1L2Q6ZVM7 507 aa25.4■■□□□ 1.66
SHKBP1-227ENST00000602011 ARHGEF25Q86VW2 580 aa25.4■■□□□ 1.66
SHKBP1-227ENST00000602011 PEAK1Q9H792 1746 aa25.4■■□□□ 1.66
SHKBP1-227ENST00000602011 SLIT3O75094 1523 aa25.39■■□□□ 1.66
SHKBP1-227ENST00000602011 DDB1Q16531 1140 aa25.39■■□□□ 1.66
SHKBP1-227ENST00000602011 LRRC37A3O60309 1634 aa25.38■■□□□ 1.65
SHKBP1-227ENST00000602011 AXIN2Q9Y2T1 843 aa25.38■■□□□ 1.65
SHKBP1-227ENST00000602011 WDR17Q8IZU2 1322 aa25.37■■□□□ 1.65
SHKBP1-227ENST00000602011 OVOS2A0A0G2JMS6 1433 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms