RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 NUTM2GQ5VZR2 741 aa28.14■■■□□ 2.1
SSBP4-210ENST00000601444 C8orf37Q96NL8 207 aa28.14■■■□□ 2.1
SSBP4-210ENST00000601444 PUS7Q96PZ0 661 aaKnown RBP28.14■■■□□ 2.1
SSBP4-210ENST00000601444 USP6P35125 1406 aa28.12■■■□□ 2.09
SSBP4-210ENST00000601444 ILDR2Q71H61 639 aa28.11■■■□□ 2.09
SSBP4-210ENST00000601444 CPSF1Q10570 1443 aaKnown RBP28.1■■■□□ 2.09
SSBP4-210ENST00000601444 CD163L1Q9NR16 1453 aa28.09■■■□□ 2.09
SSBP4-210ENST00000601444 ABTB2Q8N961 1025 aa28.09■■■□□ 2.09
SSBP4-210ENST00000601444 ZNF692Q9BU19 519 aaPredicted RBP28.09■■■□□ 2.09
SSBP4-210ENST00000601444 SSH2Q76I76 1423 aa28.09■■■□□ 2.09
SSBP4-210ENST00000601444 HAP1P54257 671 aaPredicted RBP28.08■■■□□ 2.09
SSBP4-210ENST00000601444 POTEAQ6S8J7 498 aa28.08■■■□□ 2.09
SSBP4-210ENST00000601444 NGLY1Q96IV0 654 aa28.08■■■□□ 2.09
SSBP4-210ENST00000601444 AFF2P51816 1311 aa28.08■■■□□ 2.09
SSBP4-210ENST00000601444 KTN1Q86UP2 1357 aaKnown RBP28.06■■■□□ 2.08
SSBP4-210ENST00000601444 AKAP12Q02952 1782 aa28.05■■■□□ 2.08
SSBP4-210ENST00000601444 BRD4O60885 1362 aaPredicted RBP28.04■■■□□ 2.08
SSBP4-210ENST00000601444 TTC21BQ7Z4L5 1316 aa28.04■■■□□ 2.08
SSBP4-210ENST00000601444 ABCA3Q99758 1704 aa28.04■■■□□ 2.08
SSBP4-210ENST00000601444 A0A1W2PP64 1363 aa28.02■■■□□ 2.08
SSBP4-210ENST00000601444 CDCA8Q53HL2 280 aa28.02■■■□□ 2.08
SSBP4-210ENST00000601444 HDGFL2Q7Z4V5 671 aaPredicted RBP28.02■■■□□ 2.08
SSBP4-210ENST00000601444 TERF2IPQ9NYB0 399 aa28.01■■■□□ 2.07
SSBP4-210ENST00000601444 CRYBG1Q9Y4K1 1723 aa28.01■■■□□ 2.07
SSBP4-210ENST00000601444 ZNF772Q68DY9 489 aaPredicted RBP28■■■□□ 2.07
SSBP4-210ENST00000601444 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28■■■□□ 2.07
SSBP4-210ENST00000601444 FNBP4Q8N3X1 1017 aaPredicted RBP28■■■□□ 2.07
SSBP4-210ENST00000601444 MARF1Q9Y4F3 1742 aaKnown RBP27.99■■■□□ 2.07
SSBP4-210ENST00000601444 NLRP6P59044 892 aa27.99■■■□□ 2.07
SSBP4-210ENST00000601444 NRKQ7Z2Y5 1582 aa27.99■■■□□ 2.07
SSBP4-210ENST00000601444 NINLQ9Y2I6 1382 aa27.99■■■□□ 2.07
SSBP4-210ENST00000601444 FAM83GA6ND36 823 aa27.98■■■□□ 2.07
SSBP4-210ENST00000601444 C11orf95C9JLR9 678 aaPredicted RBP27.98■■■□□ 2.07
SSBP4-210ENST00000601444 NLRP13Q86W25 1043 aa27.98■■■□□ 2.07
SSBP4-210ENST00000601444 USP21Q9UK80 565 aa27.98■■■□□ 2.07
SSBP4-210ENST00000601444 MON2Q7Z3U7 1717 aa27.98■■■□□ 2.07
SSBP4-210ENST00000601444 POLR3GLQ9BT43 218 aa27.97■■■□□ 2.07
SSBP4-210ENST00000601444 PIK3C2AO00443 1686 aa27.97■■■□□ 2.07
SSBP4-210ENST00000601444 USP19O94966 1318 aa27.96■■■□□ 2.07
SSBP4-210ENST00000601444 ZRANB1Q9UGI0 708 aa27.96■■■□□ 2.07
SSBP4-210ENST00000601444 TTC21AQ8NDW8 1320 aa27.95■■■□□ 2.07
SSBP4-210ENST00000601444 PHRF1Q9P1Y6 1649 aaKnown RBP27.95■■■□□ 2.06
SSBP4-210ENST00000601444 ZC3H6P61129 1189 aaKnown RBP27.94■■■□□ 2.06
SSBP4-210ENST00000601444 NME9Q86XW9 330 aa27.94■■■□□ 2.06
SSBP4-210ENST00000601444 QTRT2Q9H974 415 aaKnown RBP27.94■■■□□ 2.06
SSBP4-210ENST00000601444 BCL9LQ86UU0 1499 aa27.94■■■□□ 2.06
SSBP4-210ENST00000601444 ANKRD36BQ8N2N9 1353 aa27.93■■■□□ 2.06
SSBP4-210ENST00000601444 EDC4Q6P2E9 1401 aaKnown RBP27.92■■■□□ 2.06
SSBP4-210ENST00000601444 GCP02774 474 aa27.92■■■□□ 2.06
SSBP4-210ENST00000601444 SLIT2O94813 1529 aa27.92■■■□□ 2.06
SSBP4-210ENST00000601444 KIAA0232Q92628 1395 aa27.91■■■□□ 2.06
SSBP4-210ENST00000601444 CHRNA2Q15822 529 aa27.9■■■□□ 2.06
SSBP4-210ENST00000601444 MYOM1P52179 1685 aa27.9■■■□□ 2.06
SSBP4-210ENST00000601444 PRDM11Q9NQV5 511 aa27.89■■■□□ 2.06
SSBP4-210ENST00000601444 UNC5CLQ8IV45 518 aa27.87■■■□□ 2.05
SSBP4-210ENST00000601444 BTG4Q9NY30 223 aa27.87■■■□□ 2.05
SSBP4-210ENST00000601444 SLIT3O75094 1523 aa27.87■■■□□ 2.05
SSBP4-210ENST00000601444 SOX12O15370 315 aa27.86■■■□□ 2.05
SSBP4-210ENST00000601444 CARD14Q9BXL6 1004 aa27.86■■■□□ 2.05
SSBP4-210ENST00000601444 PLCH1Q4KWH8 1693 aa27.85■■■□□ 2.05
SSBP4-210ENST00000601444 RXRBP28702 533 aa27.85■■■□□ 2.05
SSBP4-210ENST00000601444 TRPC5Q9UL62 973 aaPredicted RBP27.85■■■□□ 2.05
SSBP4-210ENST00000601444 USP31Q70CQ4 1352 aa27.85■■■□□ 2.05
SSBP4-210ENST00000601444 ATRNO75882 1429 aa27.84■■■□□ 2.05
SSBP4-210ENST00000601444 COL14A1Q05707 1796 aaKnown RBP27.83■■■□□ 2.05
SSBP4-210ENST00000601444 ZBTB7CA1YPR0 619 aa27.82■■■□□ 2.04
SSBP4-210ENST00000601444 KIF7Q2M1P5 1343 aa27.82■■■□□ 2.04
SSBP4-210ENST00000601444 CPDO75976 1380 aa27.82■■■□□ 2.04
SSBP4-210ENST00000601444 RBM6P78332 1123 aaKnown RBP27.81■■■□□ 2.04
SSBP4-210ENST00000601444 FYB1O15117 783 aa27.79■■■□□ 2.04
SSBP4-210ENST00000601444 KCNH5Q8NCM2 988 aa27.79■■■□□ 2.04
SSBP4-210ENST00000601444 NWD2Q9ULI1 1742 aa27.78■■■□□ 2.04
SSBP4-210ENST00000601444 OVOS2A0A0J9YW53 1432 aa27.78■■■□□ 2.04
SSBP4-210ENST00000601444 OVOS2Q6IE36 1432 aa27.78■■■□□ 2.04
SSBP4-210ENST00000601444 NSD3Q9BZ95 1437 aa27.78■■■□□ 2.04
SSBP4-210ENST00000601444 GJD4Q96KN9 370 aaPredicted RBP27.78■■■□□ 2.04
SSBP4-210ENST00000601444 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.78■■■□□ 2.04
SSBP4-210ENST00000601444 GGNBP2Q9H3C7 697 aa27.77■■■□□ 2.04
SSBP4-210ENST00000601444 NRAPQ86VF7 1730 aa27.76■■■□□ 2.03
SSBP4-210ENST00000601444 USP54Q70EL1 1684 aa27.76■■■□□ 2.03
SSBP4-210ENST00000601444 VPS72Q15906 364 aa27.76■■■□□ 2.03
SSBP4-210ENST00000601444 ARHGEF25Q86VW2 580 aa27.76■■■□□ 2.03
SSBP4-210ENST00000601444 PANK3Q9H999 370 aa27.76■■■□□ 2.03
SSBP4-210ENST00000601444 NFAT5O94916 1531 aa27.76■■■□□ 2.03
SSBP4-210ENST00000601444 CAMTA1Q9Y6Y1 1673 aa27.75■■■□□ 2.03
SSBP4-210ENST00000601444 STRN4Q9NRL3 753 aa27.75■■■□□ 2.03
SSBP4-210ENST00000601444 CCDC9Q9Y3X0 531 aaKnown RBP27.75■■■□□ 2.03
SSBP4-210ENST00000601444 COG3Q96JB2 828 aa27.74■■■□□ 2.03
SSBP4-210ENST00000601444 LMO7Q8WWI1 1683 aa27.73■■■□□ 2.03
SSBP4-210ENST00000601444 FBLN1P23142 703 aa27.73■■■□□ 2.03
SSBP4-210ENST00000601444 AXIN2Q9Y2T1 843 aa27.72■■■□□ 2.03
SSBP4-210ENST00000601444 GLI3P10071 1580 aa27.72■■■□□ 2.03
SSBP4-210ENST00000601444 AATKQ6ZMQ8 1374 aa27.72■■■□□ 2.03
SSBP4-210ENST00000601444 WASHC2AQ641Q2 1341 aa27.71■■■□□ 2.03
SSBP4-210ENST00000601444 RGS12O14924 1447 aa27.7■■■□□ 2.03
SSBP4-210ENST00000601444 EVA1CP58658 441 aa27.7■■■□□ 2.02
SSBP4-210ENST00000601444 CCDC7Q96M83 1385 aa27.7■■■□□ 2.02
SSBP4-210ENST00000601444 COL18A1P39060 1754 aa27.68■■■□□ 2.02
SSBP4-210ENST00000601444 LARP1Q6PKG0 1096 aaKnown RBP27.68■■■□□ 2.02
SSBP4-210ENST00000601444 CDK12Q9NYV4 1490 aaPredicted RBP27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 528.9 ms