RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 APBB1O00213 710 aa7.52□□□□□ -1.21
CKS1BP3-201ENST00000600888 FKBPLQ9UIM3 349 aa7.52□□□□□ -1.21
CKS1BP3-201ENST00000600888 ZNF598Q86UK7 904 aaKnown RBP7.51□□□□□ -1.21
CKS1BP3-201ENST00000600888 WNT7BP56706 349 aa7.5□□□□□ -1.21
CKS1BP3-201ENST00000600888 SH3BP2P78314 561 aa7.5□□□□□ -1.21
CKS1BP3-201ENST00000600888 SKOR1P84550 965 aa7.5□□□□□ -1.21
CKS1BP3-201ENST00000600888 LINC01559Q495D7 138 aa7.5□□□□□ -1.21
CKS1BP3-201ENST00000600888 ZNF511Q8NB15 262 aa7.5□□□□□ -1.21
CKS1BP3-201ENST00000600888 ZNF697Q5TEC3 545 aa7.49□□□□□ -1.21
CKS1BP3-201ENST00000600888 PNMA1Q8ND90 353 aa7.49□□□□□ -1.21
CKS1BP3-201ENST00000600888 GPKOWQ92917 476 aaPredicted RBP eCLIP7.49□□□□□ -1.21
CKS1BP3-201ENST00000600888 PRM3Q9NNZ6 103 aa7.49□□□□□ -1.21
CKS1BP3-201ENST00000600888 NDUFB9Q9Y6M9 179 aa7.49□□□□□ -1.21
CKS1BP3-201ENST00000600888 ZC3H4Q9UPT8 1303 aaKnown RBP7.49□□□□□ -1.21
CKS1BP3-201ENST00000600888 NBPF14Q5TI25 921 aa7.48□□□□□ -1.21
CKS1BP3-201ENST00000600888 PDXDC2PQ6P474 469 aa7.48□□□□□ -1.21
CKS1BP3-201ENST00000600888 RC3H1Q5TC82 1133 aaKnown RBP7.47□□□□□ -1.21
CKS1BP3-201ENST00000600888 FOXJ1Q92949 421 aa7.47□□□□□ -1.21
CKS1BP3-201ENST00000600888 GDPD2Q9HCC8 539 aa7.47□□□□□ -1.21
CKS1BP3-201ENST00000600888 TBC1D2BQ9UPU7 963 aa7.47□□□□□ -1.21
CKS1BP3-201ENST00000600888 WNT7AO00755 349 aa7.46□□□□□ -1.22
CKS1BP3-201ENST00000600888 GPR37L1O60883 481 aa7.46□□□□□ -1.22
CKS1BP3-201ENST00000600888 UBTFP17480 764 aaKnown RBP7.46□□□□□ -1.22
CKS1BP3-201ENST00000600888 SH3BP5LQ7L8J4 393 aa7.46□□□□□ -1.22
CKS1BP3-201ENST00000600888 BPHLQ86WA6 291 aaPredicted RBP7.46□□□□□ -1.22
CKS1BP3-201ENST00000600888 COG6Q9Y2V7 657 aa7.46□□□□□ -1.22
CKS1BP3-201ENST00000600888 GDF9O60383 454 aa7.45□□□□□ -1.22
CKS1BP3-201ENST00000600888 FOXC1Q12948 553 aa7.45□□□□□ -1.22
CKS1BP3-201ENST00000600888 AGERQ15109 404 aa7.45□□□□□ -1.22
CKS1BP3-201ENST00000600888 SH3RF1Q7Z6J0 888 aa7.45□□□□□ -1.22
CKS1BP3-201ENST00000600888 POM121Q96HA1 1249 aa7.45□□□□□ -1.22
CKS1BP3-201ENST00000600888 PKD2L1Q9P0L9 805 aa7.45□□□□□ -1.22
CKS1BP3-201ENST00000600888 GPSM3Q9Y4H4 160 aa7.45□□□□□ -1.22
CKS1BP3-201ENST00000600888 RAD21O60216 631 aa7.44□□□□□ -1.22
CKS1BP3-201ENST00000600888 ABL2P42684 1182 aa7.44□□□□□ -1.22
CKS1BP3-201ENST00000600888 PTK2Q05397 1052 aa7.44□□□□□ -1.22
CKS1BP3-201ENST00000600888 C4orf48Q5BLP8 95 aa7.44□□□□□ -1.22
CKS1BP3-201ENST00000600888 TRIM67Q6ZTA4 783 aa7.44□□□□□ -1.22
CKS1BP3-201ENST00000600888 EHBP1Q8NDI1 1231 aa7.44□□□□□ -1.22
CKS1BP3-201ENST00000600888 VARSP26640 1264 aaKnown RBP7.43□□□□□ -1.22
CKS1BP3-201ENST00000600888 MRGPRX2Q96LB1 330 aa7.43□□□□□ -1.22
CKS1BP3-201ENST00000600888 OCSTAMPQ9BR26 566 aa7.43□□□□□ -1.22
CKS1BP3-201ENST00000600888 ARHGAP9Q9BRR9 750 aa7.43□□□□□ -1.22
CKS1BP3-201ENST00000600888 CCDC180Q9P1Z9 1646 aa7.42□□□□□ -1.22
CKS1BP3-201ENST00000600888 MAGEB6P1A0A0J9YX57 407 aa7.42□□□□□ -1.22
CKS1BP3-201ENST00000600888 ZBBXA8MT70 800 aa7.42□□□□□ -1.22
CKS1BP3-201ENST00000600888 SIAH2O43255 324 aa7.42□□□□□ -1.22
CKS1BP3-201ENST00000600888 IRF5Q13568 498 aa7.42□□□□□ -1.22
CKS1BP3-201ENST00000600888 CLUAP1Q96AJ1 413 aa7.42□□□□□ -1.22
CKS1BP3-201ENST00000600888 TNFRSF10AO00220 468 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 FBXO45P0C2W1 286 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 PRR20EP86478 221 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 PRR20CP86479 221 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 PRR20DP86480 221 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 PRR20BP86481 221 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 PRR20AP86496 221 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 ZBTB33Q86T24 672 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 CARD14Q9BXL6 1004 aa7.41□□□□□ -1.22
CKS1BP3-201ENST00000600888 NR1H3Q13133 447 aa7.4□□□□□ -1.22
CKS1BP3-201ENST00000600888 FAM174AQ8TBP5 190 aa7.4□□□□□ -1.22
CKS1BP3-201ENST00000600888 ADAM32Q8TC27 787 aa7.4□□□□□ -1.22
CKS1BP3-201ENST00000600888 C1QTNF2Q9BXJ5 285 aa7.4□□□□□ -1.22
CKS1BP3-201ENST00000600888 PDZRN3Q9UPQ7 1066 aa7.4□□□□□ -1.22
CKS1BP3-201ENST00000600888 ERFEQ4G0M1 354 aa7.39□□□□□ -1.23
CKS1BP3-201ENST00000600888 CYP4X1Q8N118 509 aa7.39□□□□□ -1.23
CKS1BP3-201ENST00000600888 SNIP1Q8TAD8 396 aaKnown RBP7.39□□□□□ -1.23
CKS1BP3-201ENST00000600888 A6NJR5 290 aa7.38□□□□□ -1.23
CKS1BP3-201ENST00000600888 GFRA3O60609 400 aa7.38□□□□□ -1.23
CKS1BP3-201ENST00000600888 WASHC4Q2M389 1173 aa7.38□□□□□ -1.23
CKS1BP3-201ENST00000600888 TRMT44Q8IYL2 757 aaKnown RBP7.38□□□□□ -1.23
CKS1BP3-201ENST00000600888 MPNDQ8N594 471 aa7.38□□□□□ -1.23
CKS1BP3-201ENST00000600888 TOR4AQ9NXH8 423 aa7.38□□□□□ -1.23
CKS1BP3-201ENST00000600888 TTC24A2A3L6 582 aaPredicted RBP7.37□□□□□ -1.23
CKS1BP3-201ENST00000600888 VAC14Q08AM6 782 aa7.37□□□□□ -1.23
CKS1BP3-201ENST00000600888 WWC1Q8IX03 1113 aa7.37□□□□□ -1.23
CKS1BP3-201ENST00000600888 CDK15Q96Q40 435 aa7.37□□□□□ -1.23
CKS1BP3-201ENST00000600888 ALDH1A1P00352 501 aa7.36□□□□□ -1.23
CKS1BP3-201ENST00000600888 ARID5BQ14865 1188 aa7.36□□□□□ -1.23
CKS1BP3-201ENST00000600888 FNBP4Q8N3X1 1017 aaPredicted RBP7.36□□□□□ -1.23
CKS1BP3-201ENST00000600888 ZMYND15Q9H091 742 aa7.36□□□□□ -1.23
CKS1BP3-201ENST00000600888 ZNF330Q9Y3S2 320 aaPredicted RBP7.36□□□□□ -1.23
CKS1BP3-201ENST00000600888 TLL2Q9Y6L7 1015 aa7.36□□□□□ -1.23
CKS1BP3-201ENST00000600888 J3QL48 77 aa7.35□□□□□ -1.23
CKS1BP3-201ENST00000600888 GRM5P41594 1212 aa7.35□□□□□ -1.23
CKS1BP3-201ENST00000600888 PROSER2Q86WR7 435 aaPredicted RBP7.35□□□□□ -1.23
CKS1BP3-201ENST00000600888 DZIP3Q86Y13 1208 aaKnown RBP7.35□□□□□ -1.23
CKS1BP3-201ENST00000600888 SLC10A4Q96EP9 437 aa7.35□□□□□ -1.23
CKS1BP3-201ENST00000600888 IRX2Q9BZI1 471 aaPredicted RBP7.35□□□□□ -1.23
CKS1BP3-201ENST00000600888 PCDHB9Q9Y5E1 797 aa7.35□□□□□ -1.23
CKS1BP3-201ENST00000600888 NRG2O14511 850 aaPredicted RBP7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 MCCD1P59942 119 aaPredicted RBP7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 EIF4G2P78344 907 aaKnown RBP eCLIP7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 LAPTM4AQ15012 233 aa7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 VASH1Q7L8A9 365 aaPredicted RBP7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 C14orf37Q86TY3 774 aa7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 CDV3Q9UKY7 258 aaKnown RBP7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 MAP4K5Q9Y4K4 846 aa7.34□□□□□ -1.23
CKS1BP3-201ENST00000600888 SMPD1P17405 629 aa7.33□□□□□ -1.24
CKS1BP3-201ENST00000600888 TRAK2O60296 914 aa7.32□□□□□ -1.24
CKS1BP3-201ENST00000600888 ADH1CP00326 375 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms