RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 A0A1W2PP64 1363 aa22.91■■□□□ 1.26
SHKBP1-219ENST00000599575 KIF7Q2M1P5 1343 aa22.91■■□□□ 1.26
SHKBP1-219ENST00000599575 C11orf95C9JLR9 678 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-219ENST00000599575 PAK3O75914 559 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-219ENST00000599575 TRPM3Q9HCF6 1732 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-219ENST00000599575 TTC21BQ7Z4L5 1316 aa22.89■■□□□ 1.26
SHKBP1-219ENST00000599575 COL22A1Q8NFW1 1626 aaPredicted RBP22.89■■□□□ 1.25
SHKBP1-219ENST00000599575 CCDC7Q96M83 1385 aa22.89■■□□□ 1.25
SHKBP1-219ENST00000599575 AKAP12Q02952 1782 aa22.88■■□□□ 1.25
SHKBP1-219ENST00000599575 ABTB2Q8N961 1025 aa22.87■■□□□ 1.25
SHKBP1-219ENST00000599575 POLR3GLQ9BT43 218 aa22.87■■□□□ 1.25
SHKBP1-219ENST00000599575 LMOD2Q6P5Q4 547 aa22.86■■□□□ 1.25
SHKBP1-219ENST00000599575 NLRP13Q86W25 1043 aa22.86■■□□□ 1.25
SHKBP1-219ENST00000599575 WASHC2AQ641Q2 1341 aa22.85■■□□□ 1.25
SHKBP1-219ENST00000599575 ALS2Q96Q42 1657 aa22.85■■□□□ 1.25
SHKBP1-219ENST00000599575 MON2Q7Z3U7 1717 aa22.85■■□□□ 1.25
SHKBP1-219ENST00000599575 MED1Q15648 1581 aaPredicted RBP22.84■■□□□ 1.25
SHKBP1-219ENST00000599575 MYOM1P52179 1685 aa22.84■■□□□ 1.25
SHKBP1-219ENST00000599575 NRKQ7Z2Y5 1582 aa22.83■■□□□ 1.25
SHKBP1-219ENST00000599575 USP31Q70CQ4 1352 aa22.82■■□□□ 1.24
SHKBP1-219ENST00000599575 USP19O94966 1318 aa22.81■■□□□ 1.24
SHKBP1-219ENST00000599575 NLRP6P59044 892 aa22.8■■□□□ 1.24
SHKBP1-219ENST00000599575 PANK3Q9H999 370 aa22.8■■□□□ 1.24
SHKBP1-219ENST00000599575 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.79■■□□□ 1.24
SHKBP1-219ENST00000599575 HAP1P54257 671 aaPredicted RBP22.78■■□□□ 1.24
SHKBP1-219ENST00000599575 KCNH5Q8NCM2 988 aa22.78■■□□□ 1.24
SHKBP1-219ENST00000599575 CARD14Q9BXL6 1004 aa22.78■■□□□ 1.24
SHKBP1-219ENST00000599575 CGNL1Q0VF96 1302 aa22.78■■□□□ 1.24
SHKBP1-219ENST00000599575 NSD3Q9BZ95 1437 aa22.76■■□□□ 1.23
SHKBP1-219ENST00000599575 NUTM2BA6NNL0 878 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-219ENST00000599575 NUTM2EB1AL46 878 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-219ENST00000599575 NUTM2AQ8IVF1 878 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-219ENST00000599575 PIK3C2AO00443 1686 aa22.74■■□□□ 1.23
SHKBP1-219ENST00000599575 FYB1O15117 783 aa22.74■■□□□ 1.23
SHKBP1-219ENST00000599575 NME9Q86XW9 330 aa22.74■■□□□ 1.23
SHKBP1-219ENST00000599575 KNSTRNQ9Y448 316 aa22.74■■□□□ 1.23
SHKBP1-219ENST00000599575 NSD2O96028 1365 aa22.74■■□□□ 1.23
SHKBP1-219ENST00000599575 LRP6O75581 1613 aa22.73■■□□□ 1.23
SHKBP1-219ENST00000599575 GCP02774 474 aa22.73■■□□□ 1.23
SHKBP1-219ENST00000599575 MEX3CQ5U5Q3 659 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-219ENST00000599575 CABLES1Q8TDN4 633 aa22.73■■□□□ 1.23
SHKBP1-219ENST00000599575 COG3Q96JB2 828 aa22.73■■□□□ 1.23
SHKBP1-219ENST00000599575 SLIT3O75094 1523 aa22.72■■□□□ 1.23
SHKBP1-219ENST00000599575 USP54Q70EL1 1684 aa22.72■■□□□ 1.23
SHKBP1-219ENST00000599575 NUTM2GQ5VZR2 741 aa22.72■■□□□ 1.23
SHKBP1-219ENST00000599575 CPDO75976 1380 aa22.72■■□□□ 1.23
SHKBP1-219ENST00000599575 OVOS2A0A0J9YW53 1432 aa22.72■■□□□ 1.23
SHKBP1-219ENST00000599575 OVOS2Q6IE36 1432 aa22.72■■□□□ 1.23
SHKBP1-219ENST00000599575 PER1O15534 1290 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-219ENST00000599575 ADAMTS2O95450 1211 aa22.69■■□□□ 1.22
SHKBP1-219ENST00000599575 CRYBG1Q9Y4K1 1723 aa22.68■■□□□ 1.22
SHKBP1-219ENST00000599575 NPC1L1Q9UHC9 1359 aa22.67■■□□□ 1.22
SHKBP1-219ENST00000599575 ZNF316A6NFI3 1004 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-219ENST00000599575 FNBP4Q8N3X1 1017 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-219ENST00000599575 ABCA3Q99758 1704 aa22.67■■□□□ 1.22
SHKBP1-219ENST00000599575 PHRF1Q9P1Y6 1649 aaKnown RBP22.67■■□□□ 1.22
SHKBP1-219ENST00000599575 NGLY1Q96IV0 654 aa22.66■■□□□ 1.22
SHKBP1-219ENST00000599575 C8orf37Q96NL8 207 aa22.65■■□□□ 1.22
SHKBP1-219ENST00000599575 GGNBP2Q9H3C7 697 aa22.65■■□□□ 1.22
SHKBP1-219ENST00000599575 PRDM11Q9NQV5 511 aa22.65■■□□□ 1.22
SHKBP1-219ENST00000599575 KIAA0232Q92628 1395 aa22.64■■□□□ 1.22
SHKBP1-219ENST00000599575 AMER1Q5JTC6 1135 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-219ENST00000599575 ZNF772Q68DY9 489 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-219ENST00000599575 ZRANB1Q9UGI0 708 aa22.64■■□□□ 1.21
SHKBP1-219ENST00000599575 ARHGEF25Q86VW2 580 aa22.63■■□□□ 1.21
SHKBP1-219ENST00000599575 PHF23Q9BUL5 403 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-219ENST00000599575 AATKQ6ZMQ8 1374 aa22.63■■□□□ 1.21
SHKBP1-219ENST00000599575 FAM83GA6ND36 823 aa22.62■■□□□ 1.21
SHKBP1-219ENST00000599575 PLEKHG5O94827 1062 aa22.62■■□□□ 1.21
SHKBP1-219ENST00000599575 ZC3H6P61129 1189 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-219ENST00000599575 NFAT5O94916 1531 aa22.62■■□□□ 1.21
SHKBP1-219ENST00000599575 ABCC6O95255 1503 aa22.62■■□□□ 1.21
SHKBP1-219ENST00000599575 MARF1Q9Y4F3 1742 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-219ENST00000599575 SLIT2O94813 1529 aa22.61■■□□□ 1.21
SHKBP1-219ENST00000599575 KIF20BQ96Q89 1820 aa22.6■■□□□ 1.21
SHKBP1-219ENST00000599575 KIF24Q5T7B8 1368 aa22.6■■□□□ 1.21
SHKBP1-219ENST00000599575 AFF2P51816 1311 aa22.59■■□□□ 1.21
SHKBP1-219ENST00000599575 COL14A1Q05707 1796 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-219ENST00000599575 USP21Q9UK80 565 aa22.58■■□□□ 1.21
SHKBP1-219ENST00000599575 MORC1Q86VD1 984 aa22.57■■□□□ 1.2
SHKBP1-219ENST00000599575 UNC5CLQ8IV45 518 aa22.57■■□□□ 1.2
SHKBP1-219ENST00000599575 BCL9LQ86UU0 1499 aa22.55■■□□□ 1.2
SHKBP1-219ENST00000599575 RTL1A6NKG5 1358 aa22.55■■□□□ 1.2
SHKBP1-219ENST00000599575 NWD2Q9ULI1 1742 aa22.55■■□□□ 1.2
SHKBP1-219ENST00000599575 SOX12O15370 315 aa22.55■■□□□ 1.2
SHKBP1-219ENST00000599575 DDX10Q13206 875 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-219ENST00000599575 BTG4Q9NY30 223 aa22.55■■□□□ 1.2
SHKBP1-219ENST00000599575 TRPC5Q9UL62 973 aaPredicted RBP22.54■■□□□ 1.2
SHKBP1-219ENST00000599575 CHRNA2Q15822 529 aa22.53■■□□□ 1.2
SHKBP1-219ENST00000599575 BLMP54132 1417 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-219ENST00000599575 ANKRD26Q9UPS8 1709 aa22.53■■□□□ 1.2
SHKBP1-219ENST00000599575 MAP3K19Q56UN5 1328 aa22.53■■□□□ 1.2
SHKBP1-219ENST00000599575 IP6K1Q92551 441 aa22.52■■□□□ 1.2
SHKBP1-219ENST00000599575 VPS72Q15906 364 aa22.51■■□□□ 1.19
SHKBP1-219ENST00000599575 RGS17Q9UGC6 210 aaPredicted RBP22.51■■□□□ 1.19
SHKBP1-219ENST00000599575 LMO7Q8WWI1 1683 aa22.51■■□□□ 1.19
SHKBP1-219ENST00000599575 AMPHP49418 695 aa22.5■■□□□ 1.19
SHKBP1-219ENST00000599575 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.5■■□□□ 1.19
SHKBP1-219ENST00000599575 PLCH1Q4KWH8 1693 aa22.49■■□□□ 1.19
SHKBP1-219ENST00000599575 EVA1CP58658 441 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms