RNA–Protein interactions for RNA: ENST00000592776.1

PTPN2-215, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 5

Gene PTPN2, Length 772 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-215	ENST00000592776	SRPK2	P78362	688 aa	Known RBP	31.63	■■■□□ 2.65
PTPN2-215	ENST00000592776	NBPF8	Q3BBV2	869 aa		31.63	■■■□□ 2.65
PTPN2-215	ENST00000592776	NUTM2G	Q5VZR2	741 aa		31.63	■■■□□ 2.65
PTPN2-215	ENST00000592776	TOPAZ1	Q8N9V7	1692 aa		31.63	■■■□□ 2.65
PTPN2-215	ENST00000592776	VPS72	Q15906	364 aa		31.62	■■■□□ 2.65
PTPN2-215	ENST00000592776	CCDC9	Q9Y3X0	531 aa	Known RBP	31.62	■■■□□ 2.65
PTPN2-215	ENST00000592776	TRPM1	Q7Z4N2	1603 aa		31.61	■■■□□ 2.65
PTPN2-215	ENST00000592776	PLEKHG3	A1L390	1219 aa		31.61	■■■□□ 2.65
PTPN2-215	ENST00000592776	POLR3A	O14802	1390 aa	Predicted RBP	31.6	■■■□□ 2.65
PTPN2-215	ENST00000592776	NWD2	Q9ULI1	1742 aa		31.59	■■■□□ 2.65
PTPN2-215	ENST00000592776	BTG4	Q9NY30	223 aa		31.59	■■■□□ 2.65
PTPN2-215	ENST00000592776	QRICH2	Q9H0J4	1663 aa		31.59	■■■□□ 2.65
PTPN2-215	ENST00000592776	CRYBG1	Q9Y4K1	1723 aa		31.58	■■■□□ 2.65
PTPN2-215	ENST00000592776	SEPT12	Q8IYM1	358 aa		31.55	■■■□□ 2.64
PTPN2-215	ENST00000592776	PPIP5K1	Q6PFW1	1433 aa		31.55	■■■□□ 2.64
PTPN2-215	ENST00000592776	ROCK2	O75116	1388 aa	Known RBP	31.55	■■■□□ 2.64
PTPN2-215	ENST00000592776	NRAP	Q86VF7	1730 aa		31.53	■■■□□ 2.64
PTPN2-215	ENST00000592776	PRDM11	Q9NQV5	511 aa		31.52	■■■□□ 2.64
PTPN2-215	ENST00000592776	COL14A1	Q05707	1796 aa	Known RBP	31.52	■■■□□ 2.64
PTPN2-215	ENST00000592776	CHRNA2	Q15822	529 aa		31.51	■■■□□ 2.63
PTPN2-215	ENST00000592776	CABP1	Q9NZU7	370 aa		31.51	■■■□□ 2.63
PTPN2-215	ENST00000592776	BRWD3	Q6RI45	1802 aa		31.5	■■■□□ 2.63
PTPN2-215	ENST00000592776	ZC3H6	P61129	1189 aa	Known RBP	31.5	■■■□□ 2.63
PTPN2-215	ENST00000592776	KIAA0232	Q92628	1395 aa		31.49	■■■□□ 2.63
PTPN2-215	ENST00000592776	TRIM26	Q12899	539 aa	Predicted RBP	31.49	■■■□□ 2.63
PTPN2-215	ENST00000592776	ABTB2	Q8N961	1025 aa		31.49	■■■□□ 2.63
PTPN2-215	ENST00000592776	ONECUT3	O60422	494 aa	Predicted RBP	31.48	■■■□□ 2.63
PTPN2-215	ENST00000592776	PHRF1	Q9P1Y6	1649 aa	Known RBP	31.48	■■■□□ 2.63
PTPN2-215	ENST00000592776	FAM98C	Q17RN3	349 aa	Known RBP	31.46	■■■□□ 2.63
PTPN2-215	ENST00000592776	EVC2	Q86UK5	1308 aa		31.45	■■■□□ 2.62
PTPN2-215	ENST00000592776		A0A0G2JS52	829 aa		31.44	■■■□□ 2.62
PTPN2-215	ENST00000592776	MYT1	Q01538	1121 aa		31.44	■■■□□ 2.62
PTPN2-215	ENST00000592776	EP400	Q96L91	3159 aa		31.43	■■■□□ 2.62
PTPN2-215	ENST00000592776	SPATA31A5	Q5VU36	1347 aa		31.41	■■■□□ 2.62
PTPN2-215	ENST00000592776	SPATA31A7	Q8IWB4	1347 aa		31.41	■■■□□ 2.62
PTPN2-215	ENST00000592776	TONSL	Q96HA7	1378 aa		31.41	■■■□□ 2.62
PTPN2-215	ENST00000592776	KRT27	Q7Z3Y8	459 aa		31.4	■■■□□ 2.62
PTPN2-215	ENST00000592776	STRN4	Q9NRL3	753 aa		31.4	■■■□□ 2.62
PTPN2-215	ENST00000592776	USP19	O94966	1318 aa		31.38	■■■□□ 2.61
PTPN2-215	ENST00000592776	USP6	P35125	1406 aa		31.38	■■■□□ 2.61
PTPN2-215	ENST00000592776	NRK	Q7Z2Y5	1582 aa		31.38	■■■□□ 2.61
PTPN2-215	ENST00000592776	NLRP13	Q86W25	1043 aa		31.37	■■■□□ 2.61
PTPN2-215	ENST00000592776	CCDC125	Q86Z20	511 aa		31.37	■■■□□ 2.61
PTPN2-215	ENST00000592776	CARD11	Q9BXL7	1154 aa		31.37	■■■□□ 2.61
PTPN2-215	ENST00000592776	GC	P02774	474 aa		31.34	■■■□□ 2.61
PTPN2-215	ENST00000592776	FAM182B	Q5T319	152 aa		31.33	■■■□□ 2.61
PTPN2-215	ENST00000592776	SPATA31A1	Q5TZJ5	1347 aa		31.32	■■■□□ 2.6
PTPN2-215	ENST00000592776	NLRP6	P59044	892 aa		31.32	■■■□□ 2.6
PTPN2-215	ENST00000592776	DEFB132	Q7Z7B7	95 aa		31.32	■■■□□ 2.6
PTPN2-215	ENST00000592776	BLM	P54132	1417 aa	Predicted RBP	31.32	■■■□□ 2.6
PTPN2-215	ENST00000592776	SSH2	Q76I76	1423 aa		31.32	■■■□□ 2.6
PTPN2-215	ENST00000592776	CAMTA1	Q9Y6Y1	1673 aa		31.31	■■■□□ 2.6
PTPN2-215	ENST00000592776	BRD4	O60885	1362 aa	Predicted RBP	31.3	■■■□□ 2.6
PTPN2-215	ENST00000592776	ZBTB7C	A1YPR0	619 aa		31.3	■■■□□ 2.6
PTPN2-215	ENST00000592776	EVA1C	P58658	441 aa		31.3	■■■□□ 2.6
PTPN2-215	ENST00000592776	USP35	Q9P2H5	1018 aa		31.3	■■■□□ 2.6
PTPN2-215	ENST00000592776	CPD	O75976	1380 aa		31.3	■■■□□ 2.6
PTPN2-215	ENST00000592776	LARP1	Q6PKG0	1096 aa	Known RBP	31.28	■■■□□ 2.6
PTPN2-215	ENST00000592776	TTC21B	Q7Z4L5	1316 aa		31.26	■■■□□ 2.6
PTPN2-215	ENST00000592776	LMO7	Q8WWI1	1683 aa		31.25	■■■□□ 2.59
PTPN2-215	ENST00000592776	THSD7A	Q9UPZ6	1657 aa		31.25	■■■□□ 2.59
PTPN2-215	ENST00000592776	PIK3C2A	O00443	1686 aa		31.25	■■■□□ 2.59
PTPN2-215	ENST00000592776	ZNF692	Q9BU19	519 aa	Predicted RBP	31.24	■■■□□ 2.59
PTPN2-215	ENST00000592776	SBNO2	Q9Y2G9	1366 aa		31.23	■■■□□ 2.59
PTPN2-215	ENST00000592776	SF3B2	Q13435	895 aa	Known RBP	31.23	■■■□□ 2.59
PTPN2-215	ENST00000592776	AKAP12	Q02952	1782 aa		31.22	■■■□□ 2.59
PTPN2-215	ENST00000592776	SLIT3	O75094	1523 aa		31.22	■■■□□ 2.59
PTPN2-215	ENST00000592776	CPSF1	Q10570	1443 aa	Known RBP	31.22	■■■□□ 2.59
PTPN2-215	ENST00000592776	ZRANB1	Q9UGI0	708 aa		31.2	■■■□□ 2.59
PTPN2-215	ENST00000592776	KTN1	Q86UP2	1357 aa	Known RBP	31.19	■■■□□ 2.58
PTPN2-215	ENST00000592776	SOX12	O15370	315 aa		31.19	■■■□□ 2.58
PTPN2-215	ENST00000592776	TMC1	Q8TDI8	760 aa		31.17	■■■□□ 2.58
PTPN2-215	ENST00000592776	COL5A2	P05997	1499 aa	Predicted RBP	31.16	■■■□□ 2.58
PTPN2-215	ENST00000592776	SLC12A5	Q9H2X9	1139 aa		31.16	■■■□□ 2.58
PTPN2-215	ENST00000592776	BARGIN	Q6ZT62	677 aa		31.15	■■■□□ 2.58
PTPN2-215	ENST00000592776	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	31.15	■■■□□ 2.58	1e-6	■□□□□ 10.9
PTPN2-215	ENST00000592776	TCP11L2	Q8N4U5	519 aa		31.15	■■■□□ 2.58
PTPN2-215	ENST00000592776	AXIN2	Q9Y2T1	843 aa		31.14	■■■□□ 2.58
PTPN2-215	ENST00000592776	TTC21A	Q8NDW8	1320 aa		31.14	■■■□□ 2.58
PTPN2-215	ENST00000592776	AATK	Q6ZMQ8	1374 aa		31.14	■■■□□ 2.58
PTPN2-215	ENST00000592776	CD163L1	Q9NR16	1453 aa		31.14	■■■□□ 2.57
PTPN2-215	ENST00000592776	ST20-MTHFS	A0A0A6YYL1	179 aa		31.13	■■■□□ 2.57
PTPN2-215	ENST00000592776	COL18A1	P39060	1754 aa		31.11	■■■□□ 2.57
PTPN2-215	ENST00000592776	TESK2	Q96S53	571 aa		31.11	■■■□□ 2.57
PTPN2-215	ENST00000592776	MON2	Q7Z3U7	1717 aa		31.1	■■■□□ 2.57
PTPN2-215	ENST00000592776	BAG6	P46379	1132 aa		31.1	■■■□□ 2.57
PTPN2-215	ENST00000592776	EN1	Q05925	392 aa	Predicted RBP	31.1	■■■□□ 2.57
PTPN2-215	ENST00000592776	ARHGEF25	Q86VW2	580 aa		31.1	■■■□□ 2.57
PTPN2-215	ENST00000592776	NME9	Q86XW9	330 aa		31.09	■■■□□ 2.57
PTPN2-215	ENST00000592776	KCNH5	Q8NCM2	988 aa		31.08	■■■□□ 2.57
PTPN2-215	ENST00000592776	CRB1	P82279	1406 aa		31.07	■■■□□ 2.57
PTPN2-215	ENST00000592776	TRIM37	O94972	964 aa		31.07	■■■□□ 2.56
PTPN2-215	ENST00000592776	PDE3B	Q13370	1112 aa		31.07	■■■□□ 2.56
PTPN2-215	ENST00000592776	FAM196A	Q6ZSG2	479 aa		31.06	■■■□□ 2.56
PTPN2-215	ENST00000592776	THRAP3	Q9Y2W1	955 aa	Known RBP	31.06	■■■□□ 2.56
PTPN2-215	ENST00000592776	TOM1L2	Q6ZVM7	507 aa		31.05	■■■□□ 2.56
PTPN2-215	ENST00000592776	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.05	■■■□□ 2.56
PTPN2-215	ENST00000592776	PCGF6	Q9BYE7	350 aa		31.05	■■■□□ 2.56
PTPN2-215	ENST00000592776	RGPD1	P0DJD0	1748 aa		31.04	■■■□□ 2.56
PTPN2-215	ENST00000592776	NFAT5	O94916	1531 aa		31.03	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms