RNA–Protein interactions for RNA: ENST00000591914.5

SMAD4-213, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 992 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-213ENST00000591914 HAP1P54257 671 aaPredicted RBP38.73■■■■□ 3.79
SMAD4-213ENST00000591914 PAK3O75914 559 aaPredicted RBP38.72■■■■□ 3.79
SMAD4-213ENST00000591914 PLEKHG5O94827 1062 aa38.7■■■■□ 3.79
SMAD4-213ENST00000591914 RBM6P78332 1123 aaKnown RBP38.7■■■■□ 3.79
SMAD4-213ENST00000591914 SLIT2O94813 1529 aa38.69■■■■□ 3.78
SMAD4-213ENST00000591914 TRPC5Q9UL62 973 aaPredicted RBP38.69■■■■□ 3.78
SMAD4-213ENST00000591914 ATRNO75882 1429 aa38.69■■■■□ 3.78
SMAD4-213ENST00000591914 CRYBG1Q9Y4K1 1723 aa38.69■■■■□ 3.78
SMAD4-213ENST00000591914 TNKS1BP1Q9C0C2 1729 aaKnown RBP38.67■■■■□ 3.78
SMAD4-213ENST00000591914 CABP1Q9NZU7 370 aa38.65■■■■□ 3.78
SMAD4-213ENST00000591914 TIMELESSQ9UNS1 1208 aa38.63■■■■□ 3.77
SMAD4-213ENST00000591914 RGS12O14924 1447 aa38.61■■■■□ 3.77
SMAD4-213ENST00000591914 PLCH1Q4KWH8 1693 aa38.61■■■■□ 3.77
SMAD4-213ENST00000591914 BRD4O60885 1362 aaPredicted RBP38.6■■■■□ 3.77
SMAD4-213ENST00000591914 UNC5CLQ8IV45 518 aa38.6■■■■□ 3.77
SMAD4-213ENST00000591914 NWD2Q9ULI1 1742 aa38.6■■■■□ 3.77
SMAD4-213ENST00000591914 ATAD2Q6PL18 1390 aa38.58■■■■□ 3.77
SMAD4-213ENST00000591914 USP6P35125 1406 aa38.57■■■■□ 3.77
SMAD4-213ENST00000591914 FAM83GA6ND36 823 aa38.56■■■■□ 3.76
SMAD4-213ENST00000591914 PHRF1Q9P1Y6 1649 aaKnown RBP38.56■■■■□ 3.76
SMAD4-213ENST00000591914 COL14A1Q05707 1796 aaKnown RBP38.52■■■■□ 3.76
SMAD4-213ENST00000591914 ABTB2Q8N961 1025 aa38.52■■■■□ 3.76
SMAD4-213ENST00000591914 NUTM2GQ5VZR2 741 aa38.51■■■■□ 3.76
SMAD4-213ENST00000591914 GJD4Q96KN9 370 aaPredicted RBP38.51■■■■□ 3.76
SMAD4-213ENST00000591914 SSH2Q76I76 1423 aa38.51■■■■□ 3.76
SMAD4-213ENST00000591914 AKAP12Q02952 1782 aa38.49■■■■□ 3.75
SMAD4-213ENST00000591914 ST20-MTHFSA0A0A6YYL1 179 aa38.48■■■■□ 3.75
SMAD4-213ENST00000591914 CCER1Q8TC90 406 aaPredicted RBP38.48■■■■□ 3.75
SMAD4-213ENST00000591914 TESK2Q96S53 571 aa38.48■■■■□ 3.75
SMAD4-213ENST00000591914 USP19O94966 1318 aa38.47■■■■□ 3.75
SMAD4-213ENST00000591914 GLI3P10071 1580 aa38.47■■■■□ 3.75
SMAD4-213ENST00000591914 CPSF1Q10570 1443 aaKnown RBP38.46■■■■□ 3.75
SMAD4-213ENST00000591914 NRAPQ86VF7 1730 aa38.46■■■■□ 3.75
SMAD4-213ENST00000591914 ZNF692Q9BU19 519 aaPredicted RBP38.46■■■■□ 3.75
SMAD4-213ENST00000591914 NRKQ7Z2Y5 1582 aa38.45■■■■□ 3.75
SMAD4-213ENST00000591914 VPS72Q15906 364 aa38.45■■■■□ 3.75
SMAD4-213ENST00000591914 KIAA0232Q92628 1395 aa38.44■■■■□ 3.74
SMAD4-213ENST00000591914 NLRP13Q86W25 1043 aa38.43■■■■□ 3.74
SMAD4-213ENST00000591914 PUS7Q96PZ0 661 aaKnown RBP38.43■■■■□ 3.74
SMAD4-213ENST00000591914 PRDM11Q9NQV5 511 aa38.43■■■■□ 3.74
SMAD4-213ENST00000591914 BTG4Q9NY30 223 aa38.42■■■■□ 3.74
SMAD4-213ENST00000591914 USP47Q96K76 1375 aa38.42■■■■□ 3.74
SMAD4-213ENST00000591914 PIK3C2AO00443 1686 aa38.41■■■■□ 3.74
SMAD4-213ENST00000591914 SLC24A1O60721 1099 aa38.39■■■■□ 3.74
SMAD4-213ENST00000591914 MON2Q7Z3U7 1717 aa38.38■■■■□ 3.74
SMAD4-213ENST00000591914 CD163L1Q9NR16 1453 aa38.37■■■■□ 3.73
SMAD4-213ENST00000591914 KTN1Q86UP2 1357 aaKnown RBP38.37■■■■□ 3.73
SMAD4-213ENST00000591914 ZC3H6P61129 1189 aaKnown RBP38.37■■■■□ 3.73
SMAD4-213ENST00000591914 TTC21BQ7Z4L5 1316 aa38.37■■■■□ 3.73
SMAD4-213ENST00000591914 CPDO75976 1380 aa38.36■■■■□ 3.73
SMAD4-213ENST00000591914 NLRP6P59044 892 aa38.35■■■■□ 3.73
SMAD4-213ENST00000591914 UPF1Q92900 1129 aaKnown RBP eCLIP38.35■■■■□ 3.73
SMAD4-213ENST00000591914 SLIT3O75094 1523 aa38.34■■■■□ 3.73
SMAD4-213ENST00000591914 GCP02774 474 aa38.34■■■■□ 3.73
SMAD4-213ENST00000591914 TTC21AQ8NDW8 1320 aa38.34■■■■□ 3.73
SMAD4-213ENST00000591914 CHRNA2Q15822 529 aa38.33■■■■□ 3.73
SMAD4-213ENST00000591914 TMC1Q8TDI8 760 aa38.32■■■■□ 3.72
SMAD4-213ENST00000591914 CCDC9Q9Y3X0 531 aaKnown RBP38.32■■■■□ 3.72
SMAD4-213ENST00000591914 SLC12A5Q9H2X9 1139 aa38.31■■■■□ 3.72
SMAD4-213ENST00000591914 LMO7Q8WWI1 1683 aa38.28■■■■□ 3.72
SMAD4-213ENST00000591914 ONECUT3O60422 494 aaPredicted RBP38.28■■■■□ 3.72
SMAD4-213ENST00000591914 NINLQ9Y2I6 1382 aa38.27■■■■□ 3.72
SMAD4-213ENST00000591914 HDGFL2Q7Z4V5 671 aaPredicted RBP38.25■■■■□ 3.71
SMAD4-213ENST00000591914 SPATA31A5Q5VU36 1347 aa38.24■■■■□ 3.71
SMAD4-213ENST00000591914 SPATA31A7Q8IWB4 1347 aa38.24■■■■□ 3.71
SMAD4-213ENST00000591914 TERF2IPQ9NYB0 399 aa38.24■■■■□ 3.71
SMAD4-213ENST00000591914 CAMTA1Q9Y6Y1 1673 aa38.23■■■■□ 3.71
SMAD4-213ENST00000591914 A0A1W2PP64 1363 aa38.23■■■■□ 3.71
SMAD4-213ENST00000591914 TMF1P82094 1093 aa38.23■■■■□ 3.71
SMAD4-213ENST00000591914 SEPT12Q8IYM1 358 aa38.22■■■■□ 3.71
SMAD4-213ENST00000591914 EDC4Q6P2E9 1401 aaKnown RBP38.21■■■■□ 3.71
SMAD4-213ENST00000591914 EP400Q96L91 3159 aa38.21■■■■□ 3.71
SMAD4-213ENST00000591914 BRWD3Q6RI45 1802 aa38.21■■■■□ 3.71
SMAD4-213ENST00000591914 USP54Q70EL1 1684 aa38.19■■■■□ 3.7
SMAD4-213ENST00000591914 SUGP2Q8IX01 1082 aaKnown RBP eCLIP38.18■■■■□ 3.7
SMAD4-213ENST00000591914 STRN4Q9NRL3 753 aa38.18■■■■□ 3.7
SMAD4-213ENST00000591914 USP31Q70CQ4 1352 aa38.18■■■■□ 3.7
SMAD4-213ENST00000591914 FAM98CQ17RN3 349 aaKnown RBP38.16■■■■□ 3.7
SMAD4-213ENST00000591914 KCNH5Q8NCM2 988 aa38.16■■■■□ 3.7
SMAD4-213ENST00000591914 AATKQ6ZMQ8 1374 aa38.16■■■■□ 3.7
SMAD4-213ENST00000591914 SPATA31A1Q5TZJ5 1347 aa38.15■■■■□ 3.7
SMAD4-213ENST00000591914 NFAT5O94916 1531 aa38.14■■■■□ 3.7
SMAD4-213ENST00000591914 EVA1CP58658 441 aa38.13■■■■□ 3.69
SMAD4-213ENST00000591914 NME9Q86XW9 330 aa38.13■■■■□ 3.69
SMAD4-213ENST00000591914 COL18A1P39060 1754 aa38.12■■■■□ 3.69
SMAD4-213ENST00000591914 COL5A2P05997 1499 aaPredicted RBP38.12■■■■□ 3.69
SMAD4-213ENST00000591914 CDCA8Q53HL2 280 aa38.12■■■■□ 3.69
SMAD4-213ENST00000591914 ZRANB1Q9UGI0 708 aa38.12■■■■□ 3.69
SMAD4-213ENST00000591914 THSD7AQ9UPZ6 1657 aa38.11■■■■□ 3.69
SMAD4-213ENST00000591914 ARHGEF25Q86VW2 580 aa38.1■■■■□ 3.69
SMAD4-213ENST00000591914 ANKRD36BQ8N2N9 1353 aa38.09■■■■□ 3.69
SMAD4-213ENST00000591914 ZBTB7CA1YPR0 619 aa38.08■■■■□ 3.69
SMAD4-213ENST00000591914 LARP1Q6PKG0 1096 aaKnown RBP38.08■■■■□ 3.69
SMAD4-213ENST00000591914 A0A0G2JS52 829 aa38.07■■■■□ 3.68
SMAD4-213ENST00000591914 MYT1Q01538 1121 aa38.07■■■■□ 3.68
SMAD4-213ENST00000591914 SOX12O15370 315 aa38.06■■■■□ 3.68
SMAD4-213ENST00000591914 KRT27Q7Z3Y8 459 aa38.06■■■■□ 3.68
SMAD4-213ENST00000591914 OVOS2A0A0J9YW53 1432 aa38.04■■■■□ 3.68
SMAD4-213ENST00000591914 OVOS2Q6IE36 1432 aa38.04■■■■□ 3.68
SMAD4-213ENST00000591914 AXIN2Q9Y2T1 843 aa38.02■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms