RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 ZNF692Q9BU19 519 aaPredicted RBP29.73■■■□□ 2.35
ATG4D-212ENST00000590096 BRD4O60885 1362 aaPredicted RBP29.73■■■□□ 2.35
ATG4D-212ENST00000590096 NINLQ9Y2I6 1382 aa29.73■■■□□ 2.35
ATG4D-212ENST00000590096 AKAP12Q02952 1782 aa29.72■■■□□ 2.35
ATG4D-212ENST00000590096 USP6P35125 1406 aa29.71■■■□□ 2.35
ATG4D-212ENST00000590096 SLC12A5Q9H2X9 1139 aa29.7■■■□□ 2.35
ATG4D-212ENST00000590096 HDGFL2Q7Z4V5 671 aaPredicted RBP29.69■■■□□ 2.34
ATG4D-212ENST00000590096 CPSF1Q10570 1443 aaKnown RBP29.69■■■□□ 2.34
ATG4D-212ENST00000590096 KTN1Q86UP2 1357 aaKnown RBP29.68■■■□□ 2.34
ATG4D-212ENST00000590096 TERF2IPQ9NYB0 399 aa29.68■■■□□ 2.34
ATG4D-212ENST00000590096 HAP1P54257 671 aaPredicted RBP29.67■■■□□ 2.34
ATG4D-212ENST00000590096 PLEKHG5O94827 1062 aa29.66■■■□□ 2.34
ATG4D-212ENST00000590096 ADAMTS2O95450 1211 aa29.65■■■□□ 2.34
ATG4D-212ENST00000590096 ABTB2Q8N961 1025 aa29.65■■■□□ 2.34
ATG4D-212ENST00000590096 MON2Q7Z3U7 1717 aa29.65■■■□□ 2.34
ATG4D-212ENST00000590096 CD163L1Q9NR16 1453 aa29.64■■■□□ 2.34
ATG4D-212ENST00000590096 CABLES1Q8TDN4 633 aa29.63■■■□□ 2.33
ATG4D-212ENST00000590096 POLR3GLQ9BT43 218 aa29.63■■■□□ 2.33
ATG4D-212ENST00000590096 A0A1W2PP64 1363 aa29.62■■■□□ 2.33
ATG4D-212ENST00000590096 ABCA3Q99758 1704 aa29.62■■■□□ 2.33
ATG4D-212ENST00000590096 SSH2Q76I76 1423 aa29.62■■■□□ 2.33
ATG4D-212ENST00000590096 NRKQ7Z2Y5 1582 aa29.61■■■□□ 2.33
ATG4D-212ENST00000590096 NUTM2GQ5VZR2 741 aa29.61■■■□□ 2.33
ATG4D-212ENST00000590096 TTC21BQ7Z4L5 1316 aa29.61■■■□□ 2.33
ATG4D-212ENST00000590096 MARF1Q9Y4F3 1742 aaKnown RBP29.59■■■□□ 2.33
ATG4D-212ENST00000590096 C8orf37Q96NL8 207 aa29.59■■■□□ 2.33
ATG4D-212ENST00000590096 TTC21AQ8NDW8 1320 aa29.59■■■□□ 2.33
ATG4D-212ENST00000590096 ANKRD36BQ8N2N9 1353 aa29.59■■■□□ 2.33
ATG4D-212ENST00000590096 MYOM1P52179 1685 aa29.57■■■□□ 2.32
ATG4D-212ENST00000590096 EDC4Q6P2E9 1401 aaKnown RBP29.57■■■□□ 2.32
ATG4D-212ENST00000590096 ZEB1P37275 1124 aaPredicted RBP29.57■■■□□ 2.32
ATG4D-212ENST00000590096 POTEAQ6S8J7 498 aa29.57■■■□□ 2.32
ATG4D-212ENST00000590096 NLRP13Q86W25 1043 aa29.57■■■□□ 2.32
ATG4D-212ENST00000590096 CRYBG1Q9Y4K1 1723 aa29.57■■■□□ 2.32
ATG4D-212ENST00000590096 NLRP6P59044 892 aa29.55■■■□□ 2.32
ATG4D-212ENST00000590096 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.55■■■□□ 2.32
ATG4D-212ENST00000590096 NGLY1Q96IV0 654 aa29.55■■■□□ 2.32
ATG4D-212ENST00000590096 PIK3C2AO00443 1686 aa29.55■■■□□ 2.32
ATG4D-212ENST00000590096 PHRF1Q9P1Y6 1649 aaKnown RBP29.53■■■□□ 2.32
ATG4D-212ENST00000590096 AFF2P51816 1311 aa29.52■■■□□ 2.32
ATG4D-212ENST00000590096 USP19O94966 1318 aa29.5■■■□□ 2.31
ATG4D-212ENST00000590096 C11orf95C9JLR9 678 aaPredicted RBP29.5■■■□□ 2.31
ATG4D-212ENST00000590096 ZNF772Q68DY9 489 aaPredicted RBP29.5■■■□□ 2.31
ATG4D-212ENST00000590096 NME9Q86XW9 330 aa29.46■■■□□ 2.31
ATG4D-212ENST00000590096 KIF7Q2M1P5 1343 aa29.45■■■□□ 2.31
ATG4D-212ENST00000590096 SLIT3O75094 1523 aa29.45■■■□□ 2.3
ATG4D-212ENST00000590096 GCP02774 474 aa29.44■■■□□ 2.3
ATG4D-212ENST00000590096 FNBP4Q8N3X1 1017 aaPredicted RBP29.44■■■□□ 2.3
ATG4D-212ENST00000590096 USP21Q9UK80 565 aa29.44■■■□□ 2.3
ATG4D-212ENST00000590096 USP31Q70CQ4 1352 aa29.43■■■□□ 2.3
ATG4D-212ENST00000590096 ZC3H6P61129 1189 aaKnown RBP29.43■■■□□ 2.3
ATG4D-212ENST00000590096 PRDM11Q9NQV5 511 aa29.43■■■□□ 2.3
ATG4D-212ENST00000590096 USP54Q70EL1 1684 aa29.42■■■□□ 2.3
ATG4D-212ENST00000590096 COL14A1Q05707 1796 aaKnown RBP29.41■■■□□ 2.3
ATG4D-212ENST00000590096 KIAA0232Q92628 1395 aa29.41■■■□□ 2.3
ATG4D-212ENST00000590096 PLCH1Q4KWH8 1693 aa29.41■■■□□ 2.3
ATG4D-212ENST00000590096 FAM83GA6ND36 823 aa29.41■■■□□ 2.3
ATG4D-212ENST00000590096 SLIT2O94813 1529 aa29.4■■■□□ 2.3
ATG4D-212ENST00000590096 NSD3Q9BZ95 1437 aa29.4■■■□□ 2.3
ATG4D-212ENST00000590096 KCNH5Q8NCM2 988 aa29.4■■■□□ 2.3
ATG4D-212ENST00000590096 ZRANB1Q9UGI0 708 aa29.4■■■□□ 2.3
ATG4D-212ENST00000590096 NWD2Q9ULI1 1742 aa29.38■■■□□ 2.29
ATG4D-212ENST00000590096 CARD14Q9BXL6 1004 aa29.38■■■□□ 2.29
ATG4D-212ENST00000590096 CPDO75976 1380 aa29.38■■■□□ 2.29
ATG4D-212ENST00000590096 CCDC7Q96M83 1385 aa29.38■■■□□ 2.29
ATG4D-212ENST00000590096 SOX12O15370 315 aa29.37■■■□□ 2.29
ATG4D-212ENST00000590096 COG3Q96JB2 828 aa29.37■■■□□ 2.29
ATG4D-212ENST00000590096 PANK3Q9H999 370 aa29.37■■■□□ 2.29
ATG4D-212ENST00000590096 BCL9LQ86UU0 1499 aa29.36■■■□□ 2.29
ATG4D-212ENST00000590096 KIF20BQ96Q89 1820 aa29.36■■■□□ 2.29
ATG4D-212ENST00000590096 UNC5CLQ8IV45 518 aa29.36■■■□□ 2.29
ATG4D-212ENST00000590096 QTRT2Q9H974 415 aaKnown RBP29.36■■■□□ 2.29
ATG4D-212ENST00000590096 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.36■■■□□ 2.29
ATG4D-212ENST00000590096 OVOS2A0A0J9YW53 1432 aa29.36■■■□□ 2.29
ATG4D-212ENST00000590096 OVOS2Q6IE36 1432 aa29.36■■■□□ 2.29
ATG4D-212ENST00000590096 CHRNA2Q15822 529 aa29.35■■■□□ 2.29
ATG4D-212ENST00000590096 TRPC5Q9UL62 973 aaPredicted RBP29.35■■■□□ 2.29
ATG4D-212ENST00000590096 ZBTB7CA1YPR0 619 aa29.34■■■□□ 2.29
ATG4D-212ENST00000590096 BTG4Q9NY30 223 aa29.34■■■□□ 2.29
ATG4D-212ENST00000590096 WASHC2AQ641Q2 1341 aa29.34■■■□□ 2.29
ATG4D-212ENST00000590096 FYB1O15117 783 aa29.33■■■□□ 2.29
ATG4D-212ENST00000590096 NFAT5O94916 1531 aa29.32■■■□□ 2.28
ATG4D-212ENST00000590096 CGNL1Q0VF96 1302 aa29.32■■■□□ 2.28
ATG4D-212ENST00000590096 GGNBP2Q9H3C7 697 aa29.32■■■□□ 2.28
ATG4D-212ENST00000590096 ATRNO75882 1429 aa29.3■■■□□ 2.28
ATG4D-212ENST00000590096 NRAPQ86VF7 1730 aa29.29■■■□□ 2.28
ATG4D-212ENST00000590096 RXRBP28702 533 aa29.29■■■□□ 2.28
ATG4D-212ENST00000590096 ARHGEF25Q86VW2 580 aa29.28■■■□□ 2.28
ATG4D-212ENST00000590096 RBM6P78332 1123 aaKnown RBP29.27■■■□□ 2.28
ATG4D-212ENST00000590096 LMO7Q8WWI1 1683 aa29.27■■■□□ 2.28
ATG4D-212ENST00000590096 AATKQ6ZMQ8 1374 aa29.26■■■□□ 2.27
ATG4D-212ENST00000590096 CCDC9Q9Y3X0 531 aaKnown RBP29.25■■■□□ 2.27
ATG4D-212ENST00000590096 KNSTRNQ9Y448 316 aa29.25■■■□□ 2.27
ATG4D-212ENST00000590096 VPS72Q15906 364 aa29.24■■■□□ 2.27
ATG4D-212ENST00000590096 LTN1O94822 1766 aa29.24■■■□□ 2.27
ATG4D-212ENST00000590096 EVA1CP58658 441 aa29.23■■■□□ 2.27
ATG4D-212ENST00000590096 CAMTA1Q9Y6Y1 1673 aa29.23■■■□□ 2.27
ATG4D-212ENST00000590096 GJD4Q96KN9 370 aaPredicted RBP29.22■■■□□ 2.27
ATG4D-212ENST00000590096 STRN4Q9NRL3 753 aa29.22■■■□□ 2.27
ATG4D-212ENST00000590096 COL18A1P39060 1754 aa29.21■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms