RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 PLEKHG5O94827 1062 aa28.93■■■□□ 2.22
CLK3-225ENST00000569063 PPIP5K1Q6PFW1 1433 aa28.93■■■□□ 2.22
CLK3-225ENST00000569063 RALGAPBQ86X10 1494 aa28.92■■■□□ 2.22
CLK3-225ENST00000569063 UNC5CLQ8IV45 518 aa28.92■■■□□ 2.22
CLK3-225ENST00000569063 RGS12O14924 1447 aa28.92■■■□□ 2.22
CLK3-225ENST00000569063 CARD11Q9BXL7 1154 aa28.91■■■□□ 2.22
CLK3-225ENST00000569063 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.9■■■□□ 2.22
CLK3-225ENST00000569063 FAM83GA6ND36 823 aa28.87■■■□□ 2.21
CLK3-225ENST00000569063 GJD4Q96KN9 370 aaPredicted RBP28.87■■■□□ 2.21
CLK3-225ENST00000569063 CABP1Q9NZU7 370 aa28.86■■■□□ 2.21
CLK3-225ENST00000569063 SBNO2Q9Y2G9 1366 aa28.86■■■□□ 2.21
CLK3-225ENST00000569063 CRYBG1Q9Y4K1 1723 aa28.85■■■□□ 2.21
CLK3-225ENST00000569063 NWD2Q9ULI1 1742 aa28.83■■■□□ 2.21
CLK3-225ENST00000569063 BRD4O60885 1362 aaPredicted RBP28.83■■■□□ 2.21
CLK3-225ENST00000569063 PLCH1Q4KWH8 1693 aa28.83■■■□□ 2.21
CLK3-225ENST00000569063 PCGF6Q9BYE7 350 aa28.82■■■□□ 2.2
CLK3-225ENST00000569063 UPF1Q92900 1129 aaKnown RBP eCLIP28.81■■■□□ 2.2
CLK3-225ENST00000569063 CLSPNQ9HAW4 1339 aa28.8■■■□□ 2.2
CLK3-225ENST00000569063 VPS72Q15906 364 aa28.8■■■□□ 2.2
CLK3-225ENST00000569063 ABTB2Q8N961 1025 aa28.8■■■□□ 2.2
CLK3-225ENST00000569063 COL14A1Q05707 1796 aaKnown RBP28.78■■■□□ 2.2
CLK3-225ENST00000569063 NUTM2GQ5VZR2 741 aa28.78■■■□□ 2.2
CLK3-225ENST00000569063 USP6P35125 1406 aa28.77■■■□□ 2.2
CLK3-225ENST00000569063 ATAD2Q6PL18 1390 aa28.77■■■□□ 2.2
CLK3-225ENST00000569063 GLI3P10071 1580 aa28.76■■■□□ 2.19
CLK3-225ENST00000569063 BTG4Q9NY30 223 aa28.76■■■□□ 2.19
CLK3-225ENST00000569063 PHRF1Q9P1Y6 1649 aaKnown RBP28.76■■■□□ 2.19
CLK3-225ENST00000569063 TIMELESSQ9UNS1 1208 aa28.75■■■□□ 2.19
CLK3-225ENST00000569063 NLRP13Q86W25 1043 aa28.74■■■□□ 2.19
CLK3-225ENST00000569063 ZNF692Q9BU19 519 aaPredicted RBP28.74■■■□□ 2.19
CLK3-225ENST00000569063 PRDM11Q9NQV5 511 aa28.74■■■□□ 2.19
CLK3-225ENST00000569063 SSH2Q76I76 1423 aa28.74■■■□□ 2.19
CLK3-225ENST00000569063 USP19O94966 1318 aa28.73■■■□□ 2.19
CLK3-225ENST00000569063 KIAA0232Q92628 1395 aa28.73■■■□□ 2.19
CLK3-225ENST00000569063 NRAPQ86VF7 1730 aa28.72■■■□□ 2.19
CLK3-225ENST00000569063 ONECUT3O60422 494 aaPredicted RBP28.7■■■□□ 2.18
CLK3-225ENST00000569063 CCDC9Q9Y3X0 531 aaKnown RBP28.7■■■□□ 2.18
CLK3-225ENST00000569063 ZC3H6P61129 1189 aaKnown RBP28.69■■■□□ 2.18
CLK3-225ENST00000569063 CPSF1Q10570 1443 aaKnown RBP28.69■■■□□ 2.18
CLK3-225ENST00000569063 PUS7Q96PZ0 661 aaKnown RBP28.68■■■□□ 2.18
CLK3-225ENST00000569063 NRKQ7Z2Y5 1582 aa28.67■■■□□ 2.18
CLK3-225ENST00000569063 CPDO75976 1380 aa28.67■■■□□ 2.18
CLK3-225ENST00000569063 ST20-MTHFSA0A0A6YYL1 179 aa28.67■■■□□ 2.18
CLK3-225ENST00000569063 TESK2Q96S53 571 aa28.67■■■□□ 2.18
CLK3-225ENST00000569063 AKAP12Q02952 1782 aa28.67■■■□□ 2.18
CLK3-225ENST00000569063 GCP02774 474 aa28.66■■■□□ 2.18
CLK3-225ENST00000569063 CHRNA2Q15822 529 aa28.66■■■□□ 2.18
CLK3-225ENST00000569063 SLC24A1O60721 1099 aa28.65■■■□□ 2.18
CLK3-225ENST00000569063 NLRP6P59044 892 aa28.65■■■□□ 2.18
CLK3-225ENST00000569063 TTC21BQ7Z4L5 1316 aa28.65■■■□□ 2.18
CLK3-225ENST00000569063 SEPT12Q8IYM1 358 aa28.64■■■□□ 2.18
CLK3-225ENST00000569063 TTC21AQ8NDW8 1320 aa28.63■■■□□ 2.17
CLK3-225ENST00000569063 KTN1Q86UP2 1357 aaKnown RBP28.62■■■□□ 2.17
CLK3-225ENST00000569063 PIK3C2AO00443 1686 aa28.62■■■□□ 2.17
CLK3-225ENST00000569063 SPATA31A5Q5VU36 1347 aa28.62■■■□□ 2.17
CLK3-225ENST00000569063 SPATA31A7Q8IWB4 1347 aa28.62■■■□□ 2.17
CLK3-225ENST00000569063 SLIT3O75094 1523 aa28.6■■■□□ 2.17
CLK3-225ENST00000569063 CD163L1Q9NR16 1453 aa28.59■■■□□ 2.17
CLK3-225ENST00000569063 TMC1Q8TDI8 760 aa28.59■■■□□ 2.17
CLK3-225ENST00000569063 SLC12A5Q9H2X9 1139 aa28.58■■■□□ 2.17
CLK3-225ENST00000569063 USP47Q96K76 1375 aa28.58■■■□□ 2.17
CLK3-225ENST00000569063 FAM98CQ17RN3 349 aaKnown RBP28.57■■■□□ 2.16
CLK3-225ENST00000569063 LMO7Q8WWI1 1683 aa28.57■■■□□ 2.16
CLK3-225ENST00000569063 CAMTA1Q9Y6Y1 1673 aa28.57■■■□□ 2.16
CLK3-225ENST00000569063 MON2Q7Z3U7 1717 aa28.57■■■□□ 2.16
CLK3-225ENST00000569063 BRWD3Q6RI45 1802 aa28.56■■■□□ 2.16
CLK3-225ENST00000569063 STRN4Q9NRL3 753 aa28.56■■■□□ 2.16
CLK3-225ENST00000569063 SPATA31A1Q5TZJ5 1347 aa28.55■■■□□ 2.16
CLK3-225ENST00000569063 EVA1CP58658 441 aa28.55■■■□□ 2.16
CLK3-225ENST00000569063 HDGFL2Q7Z4V5 671 aaPredicted RBP28.55■■■□□ 2.16
CLK3-225ENST00000569063 CCER1Q8TC90 406 aaPredicted RBP28.55■■■□□ 2.16
CLK3-225ENST00000569063 CCDC125Q86Z20 511 aa28.54■■■□□ 2.16
CLK3-225ENST00000569063 TERF2IPQ9NYB0 399 aa28.54■■■□□ 2.16
CLK3-225ENST00000569063 EP400Q96L91 3159 aa28.54■■■□□ 2.16
CLK3-225ENST00000569063 NINLQ9Y2I6 1382 aa28.53■■■□□ 2.16
CLK3-225ENST00000569063 KRT27Q7Z3Y8 459 aa28.53■■■□□ 2.16
CLK3-225ENST00000569063 KCNH5Q8NCM2 988 aa28.53■■■□□ 2.16
CLK3-225ENST00000569063 AATKQ6ZMQ8 1374 aa28.52■■■□□ 2.16
CLK3-225ENST00000569063 A0A0G2JS52 829 aa28.51■■■□□ 2.15
CLK3-225ENST00000569063 MYT1Q01538 1121 aa28.51■■■□□ 2.15
CLK3-225ENST00000569063 TMF1P82094 1093 aa28.5■■■□□ 2.15
CLK3-225ENST00000569063 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.5■■■□□ 2.15
CLK3-225ENST00000569063 A0A1W2PP64 1363 aa28.5■■■□□ 2.15
CLK3-225ENST00000569063 USP31Q70CQ4 1352 aa28.5■■■□□ 2.15
CLK3-225ENST00000569063 LARP1Q6PKG0 1096 aaKnown RBP28.49■■■□□ 2.15
CLK3-225ENST00000569063 EDC4Q6P2E9 1401 aaKnown RBP28.49■■■□□ 2.15
CLK3-225ENST00000569063 COL5A2P05997 1499 aaPredicted RBP28.48■■■□□ 2.15
CLK3-225ENST00000569063 ARHGEF25Q86VW2 580 aa28.48■■■□□ 2.15
CLK3-225ENST00000569063 THSD7AQ9UPZ6 1657 aa28.48■■■□□ 2.15
CLK3-225ENST00000569063 ZBTB7CA1YPR0 619 aa28.46■■■□□ 2.15
CLK3-225ENST00000569063 BARGINQ6ZT62 677 aa28.46■■■□□ 2.15
CLK3-225ENST00000569063 NME9Q86XW9 330 aa28.46■■■□□ 2.15
CLK3-225ENST00000569063 ZRANB1Q9UGI0 708 aa28.45■■■□□ 2.14
CLK3-225ENST00000569063 USP54Q70EL1 1684 aa28.45■■■□□ 2.14
CLK3-225ENST00000569063 COL18A1P39060 1754 aa28.45■■■□□ 2.14
CLK3-225ENST00000569063 BLMP54132 1417 aaPredicted RBP28.44■■■□□ 2.14
CLK3-225ENST00000569063 USP35Q9P2H5 1018 aa28.44■■■□□ 2.14
CLK3-225ENST00000569063 NFAT5O94916 1531 aa28.43■■■□□ 2.14
CLK3-225ENST00000569063 CDCA8Q53HL2 280 aa28.42■■■□□ 2.14
CLK3-225ENST00000569063 TCP11L2Q8N4U5 519 aa28.42■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms