RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 CRYBG1Q9Y4K1 1723 aa25.89■■□□□ 1.74
CLK3-221ENST00000568139 FAM98CQ17RN3 349 aaKnown RBP25.89■■□□□ 1.74
CLK3-221ENST00000568139 A0A0G2JS52 829 aa25.86■■□□□ 1.73
CLK3-221ENST00000568139 MYT1Q01538 1121 aa25.86■■□□□ 1.73
CLK3-221ENST00000568139 NGDNQ8NEJ9 315 aaKnown RBP25.86■■□□□ 1.73
CLK3-221ENST00000568139 SPATA31A5Q5VU36 1347 aa25.85■■□□□ 1.73
CLK3-221ENST00000568139 SPATA31A7Q8IWB4 1347 aa25.85■■□□□ 1.73
CLK3-221ENST00000568139 BAG6P46379 1132 aa25.84■■□□□ 1.73
CLK3-221ENST00000568139 ARHGEF28Q8N1W1 1705 aaKnown RBP25.83■■□□□ 1.73
CLK3-221ENST00000568139 LRP5O75197 1615 aa25.82■■□□□ 1.72
CLK3-221ENST00000568139 PAK3O75914 559 aaPredicted RBP25.82■■□□□ 1.72
CLK3-221ENST00000568139 ITSN1Q15811 1721 aa25.82■■□□□ 1.72
CLK3-221ENST00000568139 ATP7BP35670 1465 aa25.8■■□□□ 1.72
CLK3-221ENST00000568139 NUDT16Q96DE0 195 aaKnown RBP25.8■■□□□ 1.72
CLK3-221ENST00000568139 THSD7AQ9UPZ6 1657 aa25.8■■□□□ 1.72
CLK3-221ENST00000568139 RGPD1P0DJD0 1748 aa25.8■■□□□ 1.72
CLK3-221ENST00000568139 HRCP23327 699 aa25.79■■□□□ 1.72
CLK3-221ENST00000568139 PRDM11Q9NQV5 511 aa25.79■■□□□ 1.72
CLK3-221ENST00000568139 FAM182BQ5T319 152 aa25.76■■□□□ 1.71
CLK3-221ENST00000568139 KIAA0232Q92628 1395 aa25.75■■□□□ 1.71
CLK3-221ENST00000568139 PSDA5PKW4 1024 aaPredicted RBP25.75■■□□□ 1.71
CLK3-221ENST00000568139 EN1Q05925 392 aaPredicted RBP25.75■■□□□ 1.71
CLK3-221ENST00000568139 PHRF1Q9P1Y6 1649 aaKnown RBP25.74■■□□□ 1.71
CLK3-221ENST00000568139 SPATA31A1Q5TZJ5 1347 aa25.74■■□□□ 1.71
CLK3-221ENST00000568139 DISP2A7MBM2 1401 aa25.73■■□□□ 1.71
CLK3-221ENST00000568139 CDK19Q9BWU1 502 aa25.73■■□□□ 1.71
CLK3-221ENST00000568139 POLR3AO14802 1390 aaPredicted RBP25.72■■□□□ 1.71
CLK3-221ENST00000568139 TNS1Q9HBL0 1735 aaKnown RBP25.72■■□□□ 1.71
CLK3-221ENST00000568139 CHRNA2Q15822 529 aa25.72■■□□□ 1.71
CLK3-221ENST00000568139 TOPAZ1Q8N9V7 1692 aa25.71■■□□□ 1.71
CLK3-221ENST00000568139 ACEP12821 1306 aa25.69■■□□□ 1.7
CLK3-221ENST00000568139 ZC3H6P61129 1189 aaKnown RBP25.69■■□□□ 1.7
CLK3-221ENST00000568139 NBPF8Q3BBV2 869 aa25.69■■□□□ 1.7
CLK3-221ENST00000568139 CCDC61Q9Y6R9 512 aa25.69■■□□□ 1.7
CLK3-221ENST00000568139 KIAA1210Q9ULL0 1709 aa25.68■■□□□ 1.7
CLK3-221ENST00000568139 PLEKHG3A1L390 1219 aa25.68■■□□□ 1.7
CLK3-221ENST00000568139 NUTM2GQ5VZR2 741 aa25.68■■□□□ 1.7
CLK3-221ENST00000568139 STRN4Q9NRL3 753 aa25.68■■□□□ 1.7
CLK3-221ENST00000568139 FAM196AQ6ZSG2 479 aa25.66■■□□□ 1.7
CLK3-221ENST00000568139 EZH2Q15910 746 aaKnown RBP25.64■■□□□ 1.7
CLK3-221ENST00000568139 BARGINQ6ZT62 677 aa25.64■■□□□ 1.7
CLK3-221ENST00000568139 CAMKK2Q96RR4 588 aa25.64■■□□□ 1.7
CLK3-221ENST00000568139 TRIM37O94972 964 aa25.63■■□□□ 1.69
CLK3-221ENST00000568139 R3HDM1Q15032 1099 aaKnown RBP25.63■■□□□ 1.69
CLK3-221ENST00000568139 SSH2Q76I76 1423 aa25.63■■□□□ 1.69
CLK3-221ENST00000568139 NRKQ7Z2Y5 1582 aa25.62■■□□□ 1.69
CLK3-221ENST00000568139 EVA1CP58658 441 aa25.62■■□□□ 1.69
CLK3-221ENST00000568139 ABTB2Q8N961 1025 aa25.62■■□□□ 1.69
CLK3-221ENST00000568139 CAMTA1Q9Y6Y1 1673 aa25.61■■□□□ 1.69
CLK3-221ENST00000568139 CPDO75976 1380 aa25.61■■□□□ 1.69
CLK3-221ENST00000568139 USP19O94966 1318 aa25.61■■□□□ 1.69
CLK3-221ENST00000568139 NBPF1Q3BBV0 1214 aa25.6■■□□□ 1.69
CLK3-221ENST00000568139 USP35Q9P2H5 1018 aa25.6■■□□□ 1.69
CLK3-221ENST00000568139 LMO7Q8WWI1 1683 aa25.6■■□□□ 1.69
CLK3-221ENST00000568139 LARP1Q6PKG0 1096 aaKnown RBP25.58■■□□□ 1.69
CLK3-221ENST00000568139 PARD3Q8TEW0 1356 aa25.57■■□□□ 1.68
CLK3-221ENST00000568139 APBA3O96018 575 aa25.57■■□□□ 1.68
CLK3-221ENST00000568139 PDE3BQ13370 1112 aa25.57■■□□□ 1.68
CLK3-221ENST00000568139 TCP11L2Q8N4U5 519 aa25.57■■□□□ 1.68
CLK3-221ENST00000568139 NLRP13Q86W25 1043 aa25.56■■□□□ 1.68
CLK3-221ENST00000568139 GCP02774 474 aa25.55■■□□□ 1.68
CLK3-221ENST00000568139 THRAP3Q9Y2W1 955 aaKnown RBP25.55■■□□□ 1.68
CLK3-221ENST00000568139 PPIP5K1Q6PFW1 1433 aa25.54■■□□□ 1.68
CLK3-221ENST00000568139 RREB1Q92766 1687 aa25.54■■□□□ 1.68
CLK3-221ENST00000568139 BRD4O60885 1362 aaPredicted RBP25.54■■□□□ 1.68
CLK3-221ENST00000568139 SRPK2P78362 688 aaKnown RBP25.53■■□□□ 1.68
CLK3-221ENST00000568139 CENPJQ9HC77 1338 aaPredicted RBP25.53■■□□□ 1.68
CLK3-221ENST00000568139 CABP2Q9NPB3 220 aa25.51■■□□□ 1.67
CLK3-221ENST00000568139 COL5A2P05997 1499 aaPredicted RBP25.5■■□□□ 1.67
CLK3-221ENST00000568139 PARP4Q9UKK3 1724 aaKnown RBP25.5■■□□□ 1.67
CLK3-221ENST00000568139 NUP188Q5SRE5 1749 aa25.49■■□□□ 1.67
CLK3-221ENST00000568139 QRICH2Q9H0J4 1663 aa25.48■■□□□ 1.67
CLK3-221ENST00000568139 CABP1Q9NZU7 370 aa25.46■■□□□ 1.67
CLK3-221ENST00000568139 USP6P35125 1406 aa25.46■■□□□ 1.67
CLK3-221ENST00000568139 CRB1P82279 1406 aa25.46■■□□□ 1.67
CLK3-221ENST00000568139 C11orf95C9JLR9 678 aaPredicted RBP25.45■■□□□ 1.66
CLK3-221ENST00000568139 SLIT3O75094 1523 aa25.44■■□□□ 1.66
CLK3-221ENST00000568139 NBPF14Q5TI25 921 aa25.44■■□□□ 1.66
CLK3-221ENST00000568139 AATKQ6ZMQ8 1374 aa25.44■■□□□ 1.66
CLK3-221ENST00000568139 NLRP6P59044 892 aa25.43■■□□□ 1.66
CLK3-221ENST00000568139 PEAK1Q9H792 1746 aa25.42■■□□□ 1.66
CLK3-221ENST00000568139 COL18A1P39060 1754 aa25.41■■□□□ 1.66
CLK3-221ENST00000568139 SBF2Q86WG5 1849 aa25.4■■□□□ 1.66
CLK3-221ENST00000568139 PIK3C2AO00443 1686 aa25.39■■□□□ 1.65
CLK3-221ENST00000568139 OVOS2A0A0G2JMS6 1433 aa25.38■■□□□ 1.65
CLK3-221ENST00000568139 OVOS2A0A0J9YW53 1432 aa25.38■■□□□ 1.65
CLK3-221ENST00000568139 OVOS2Q6IE36 1432 aa25.38■■□□□ 1.65
CLK3-221ENST00000568139 ZBTB7CA1YPR0 619 aa25.38■■□□□ 1.65
CLK3-221ENST00000568139 LRRC37A3O60309 1634 aa25.37■■□□□ 1.65
CLK3-221ENST00000568139 L3MBTL2Q969R5 705 aa25.37■■□□□ 1.65
CLK3-221ENST00000568139 EVC2Q86UK5 1308 aa25.37■■□□□ 1.65
CLK3-221ENST00000568139 RGPD3A6NKT7 1758 aaPredicted RBP25.36■■□□□ 1.65
CLK3-221ENST00000568139 RGPD4Q7Z3J3 1758 aa25.36■■□□□ 1.65
CLK3-221ENST00000568139 PLSCR1O15162 318 aa25.35■■□□□ 1.65
CLK3-221ENST00000568139 DDB1Q16531 1140 aa25.35■■□□□ 1.65
CLK3-221ENST00000568139 TOM1L2Q6ZVM7 507 aa25.35■■□□□ 1.65
CLK3-221ENST00000568139 AXIN2Q9Y2T1 843 aa25.35■■□□□ 1.65
CLK3-221ENST00000568139 WNK3Q9BYP7 1800 aa25.34■■□□□ 1.65
CLK3-221ENST00000568139 WDR17Q8IZU2 1322 aa25.34■■□□□ 1.65
CLK3-221ENST00000568139 TRPM1Q7Z4N2 1603 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms